BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938779
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57960.1 | Symbols: | Emsy N Terminus (ENT) domain-containi... 785 0.0
> AT3G57960.1 | Symbols: | Emsy N Terminus (ENT) domain-containing
protein | chr3:21463091-21464194 FORWARD LENGTH=672
Length=672
Score = 785 bits (425), Expect = 0.0
Identities = 580/654 (89%), Gaps = 14/654 (2%)
Strand=Plus/Plus
Query 178 ACATAGCACCCGAGTCTGACTCCAGCAGCGACAGCAGTGACGAAGGAGATGTGGCGTGTT 237
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 23 ACATAGCATATGAGTCTGACTCCAGCAGCGATAGCAGTGACGAAGGAGATGTGCCGTGTT 82
Query 238 TACCCGAGAAAGAGGTCAAT-AAAGAGACACTCCAAGAA-CTCCAGAAAAAAGCTTTCTA 295
||||| || | ||||||||| |||| || ||||||| || ||||||| ||||||||||||
Sbjct 83 TACCCAAGGATGAGGTCAATGAAAG-GAAACTCCAA-AATCTCCAGAGAAAAGCTTTCTA 140
Query 296 CTCTCTTCTCCAAGCTTTCGCTTTAGAAACCTCGACAATGTCAAACAAGAGGACTCAGAT 355
| |||||||||| |||||||||| |||| ||| ||||||||||||||||||||| ||||
Sbjct 141 CAATCTTCTCCAAACTTTCGCTTTCGAAAACTCCACAATGTCAAACAAGAGGACTGAGAT 200
Query 356 CATAGAAAAACTGATGAACGAGTGGGGGATTGCTAACGAAACTCAAATCTCTTTTGCGGA 415
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 201 CATAGGAAAACTGATGAACGAGTGGGGGATTGCTAACGAAACTCATATCTCCTTTGCGGA 260
Query 416 TCAGATTCAGAAGAAACTTCTGACCCTACAACAAATGAAGGATTCTGATAAGAAGGAAAC 475
|||||||||||||||||||||||| ||| |||||| |||| |||||| | |||||||||
Sbjct 261 TCAGATTCAGAAGAAACTTCTGACTCTAAAACAAACGAAGCATTCTGGTGTGAAGGAAAC 320
Query 476 GCAGATACTACCAGAGACGCCATTGGCCCCAC-CTGCAACGCAGAGTTGGACATTTGTTC 534
|||| | |||||| ||||||||| | || || ||||||||| |||| | |||||||
Sbjct 321 GCAG--A-TACCAGCGACGCCATT-GACCAACACTGCAACGCCGAGTACGTTTTTTGTTC 376
Query 535 CTAAACCTGGCAAAAGCTGGGGCAGTGTTAATCCTGAGTCTCTTATTGGAAAATGGGTCA 594
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 377 CTAAACCTGTCAAAAGCTGGGGCAGTGTTAATCCAGAGTCTCTTATTGGAAAATGGGTCA 436
Query 595 GTATGAGGCTGCCTGATGAAGCTGATTTCGCTGAATACATCATCAAAGCATATGATGCGG 654
|||| ||||| |||||| ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 437 GTATAAGGCTTCCTGATAAAGCTAAGTTCACTGAATACATCATCAAAGCATATGATGCGG 496
Query 655 AAAAGGAAATGCATAGCATAGTGAACGCAGA-GTCGAATGCAATGGAGGTTGATGGCATT 713
||||||||||||||||| || ||| || | | ||||| |||||||||||||| |||||
Sbjct 497 AAAAGGAAATGCATAGCCTATTGACCG-AAACCTCGAACCCAATGGAGGTTGATTGCATT 555
Query 714 GATCCGTTTAGCTGGATAGATATCAGAGAAATTGCGCCTAACGATATCATGTGGGAAGGT 773
|| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 556 GACCCGTTTAGATGGATAGATATCAGAGATATTTCGCCTAACGATATCATGTGGGAAGGT 615
Query 774 GGACAAAAGCCAAAGTTTGATACTCCCAACCAATCTGC---AGCTACAGCTCAA 824
|||||||||||||| |||| | |||||||||||||||| |||||||| ||||
Sbjct 616 GGACAAAAGCCAAACTTTGCTGCTCCCAACCAATCTGCTGCAGCTACAGGTCAA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5