BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938783

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58000.1 | Symbols:  | VQ motif-containing protein | chr3:21...   893    0.0  


> AT3G58000.1 | Symbols:  | VQ motif-containing protein | chr3:21474950-21475477 
FORWARD LENGTH=528
Length=528

 Score =  893 bits (483),  Expect = 0.0
 Identities = 513/528 (97%), Gaps = 0/528 (0%)
 Strand=Plus/Plus

Query  21   ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCATTATCAAGCATAGCGGTGCACAAA  80
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGAAGCCACGATCTTCGAGAAAAGAAGAAGCTCGTTATCAAGCATAGCGGTGCACAAA  60

Query  81   CAGTCATACTCCATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCT  140
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   CAGTCATACTCGATAACCAAATCAAAGCCAAAGATCCGTATAATTCACATATTTGCTCCG  120

Query  141  GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAGATCATCAAGACCGACGTTGCCAACTTCCGTGAGCTCGTCCAAAGCCTCACCGGCAAA  180

Query  201  CCAGACGACCACAGAACTTCAAAAACAAAACCTAGAAGAGATATGCATCGTCTTCATCGT  260
            ||||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||
Sbjct  181  CCAGACGACCAGAGAACTTCCAAGGCAAAACCTAGAAGAGATATGCATCGTCTTCATCGT  240

Query  261  CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGGG  320
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  241  CAAGTCCAAGACATGATCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGAG  300

Query  321  TTCTGCTTAAATTCAGAAGAGATCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA  380
            |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTCTGCTTAAACGCAGAAGAGCTCTCGATGACTTGGAACGGTAATAATGGCGCTGGTGAA  360

Query  381  AGCTCCGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT  440
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGCTCTGGAGGGTTCTTGAATGGTTTGGGAGATTTCGAAGGGTTTATTCAAGAACTTGGT  420

Query  441  GAATTTCCGTATTTGCCCTTGTCCTCCATGGATGCTTCTGCTTCTTCTAATTCCTCTTCT  500
            |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  421  GAATTTCCTTATTTGCCCTTGTCCTCCATTGATGCTTCTGCTTCTTCTAACTCCTCTTCT  480

Query  501  TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA  548
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TCCTCTCATTTACATGGTGGATCAGTTTTCTCAGATCAATTCGCTTAA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27277141821


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5