BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938787
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsi... 1615 0.0
AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like... 965 0.0
> AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis
2 | chr3:21488516-21491488 FORWARD LENGTH=1601
Length=1601
Score = 1615 bits (874), Expect = 0.0
Identities = 941/973 (97%), Gaps = 5/973 (1%)
Strand=Plus/Plus
Query 1 TGAATTAGGGATTTGGGCTCACCATGGCTCCTGGAGGTAGTGCTTTGAAAGAAGTCATGG 60
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 249 TGAATTAGGGATTTGGGCTCGTCATGGCTCCTGGAGGCAGTGCTTTGAAAGAAGTCATGG 308
Query 61 AATCTAATTCAACGGGAATGGATTATGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 309 AATCTAATTCAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAG-T--TAATA 365
Query 121 ATAACAAACCTACAAAACCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATAACAAACCTACAAAGCCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACA 425
Query 181 ATGGTGTTTATGAGCTTCTTGAATGTCCCGTTTGTACAAATTTAATGTACCCTCCAATTC 240
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 ATGGTGTTTACGAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTC 485
Query 241 ATCAGTGTCCAAATGGCCACACATTATGTTCAAACTGCAAAGTGAGAGTGCAGAACACAT 300
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 ATCAGTGTCCGAATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACAT 545
Query 301 GCCCTACATGTCGCTATGAGCTTGGTAATATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 360
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 546 GCCCTACATGTCGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAG 605
Query 361 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTTCCTTACT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 606 AGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACT 665
Query 421 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGTCCTTATGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 666 ACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGCCCTTATGCTG 725
Query 481 GTTCTGAGTGCTCGGTTACAGGTGATATCCCCACACTTGTTGTTCATCTCAAAGATGATC 540
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 726 GTTCTGAGTGTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATC 785
Query 541 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGATATGTAAAGTCAAATCCAC 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 ATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCAC 845
Query 601 ATGAAGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATGAGGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCT 905
Query 661 GTTTACACTTTGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GTTTACACTTCGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTT 965
Query 721 TCATGGGAGATGAGAACGAGGCAAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 780
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 966 TTATGGGAGATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATG 1025
Query 781 GACGTAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GACGGAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCC 1085
Query 841 GGGACAGTCAAGACGGACTCATCATCCCAAGAAACCTCGCACTCTACTTCTCTGGAGGTG 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1086 GGGACAGTCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGGAGGTG 1145
Query 901 ATAGGCAAGAACTCAAGTTGAGAGTGACCGGGCGAATCTGGAAAGAGGAGTAAACCAAAA 960
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1146 ATAGGCAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGGAAAGAGGAGTAAACGAAAA 1205
Query 961 -CGAAGAAAAGAA 972
|||| ||| |||
Sbjct 1206 ACGAA-AAACGAA 1217
> AT2G41980.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr2:17523494-17525914 REVERSE LENGTH=1335
Length=1335
Score = 965 bits (522), Expect = 0.0
Identities = 812/950 (85%), Gaps = 28/950 (3%)
Strand=Plus/Plus
Query 12 TTTGGGCTCACCATGGCTCCTGGAGGTAGTGCTTTGAAAGAAG-TCATGGAATCTAATTC 70
||||| ||| | ||||||||||| || ||||| |||||||||| || | |||||||| ||
Sbjct 406 TTTGGACTCTCTATGGCTCCTGGTGGCAGTGCATTGAAAGAAGCTC-TAGAATCTAACTC 464
Query 71 AACGGGAATGGATTATGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAATAACAAACC 130
|| || | |||||||||||||| | ||| ||| | ||| | ||||| ||||||
Sbjct 465 GACAGGCGTAGATTATGAGGTTAAGATGGC-AAA---G--GTTGAGGCTAATAGCAAACC 518
Query 131 TACAAAACCAGGGAGT-GCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTT 189
|||||| |||| ||| || ||||| ||| || ||||||||| |||||||||||
Sbjct 519 AACAAAATCAGGTAGTGGC-TCCATTGG-AAA-AT----TCCATTCGAGCAATGGTGTTT 571
Query 190 ATGAGCTTCTTGAATGTCCCGTTTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTC 249
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 572 ATGAGCTCCTTGAATGTCCGGTTTGTACAAATTTAATGTATCCTCCAATTCATCAGTGCC 631
Query 250 CAAATGGCCACACATTATGTTCAAACTGCAAAGTGAGAGTGCAGAACACATGCCCTACAT 309
| || ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 632 CGAACGGCCACACATTGTGTTCAAGCTGCAAACTGAGAGTGCAGAACACATGCCCTACAT 691
Query 310 GTCGCTATGAGCTTGGTAATATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGG 369
| ||||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||
Sbjct 692 GCCGCTATGAGCTTGGTAACATAAGATGCTTGGCTCTTGAGAAGGTTGCGGAATCATTGG 751
Query 370 AAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTTCCTTACTACAGCAAGC 429
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 752 AAGTTCCATGCCGGTACCAAAATTTAGGGTGTCAGGACATTTTCCCATACTACAGCAAGC 811
Query 430 TTAAGCACGAGCAGCATTGCAGGTTTAGG-CCTTACA-CTTGTCCTTATGCTGGTTCTGA 487
| |||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||
Sbjct 812 TCAAGCACGAGCAGCATTGCAGGTTTCGATCCT-ACAGCT-GTCCTTATGCTGGTTCTGA 869
Query 488 GTGCTCGGTTACAGGTGATATCCCCACACTTGTTGTTCATCTCAAAGATGATCATAAAGT 547
||| || || || |||||||| || || ||||||| |||||||||||||||||||||||
Sbjct 870 GTGTTCAGTGACGGGTGATATTCCAACGCTTGTTGACCATCTCAAAGATGATCATAAAGT 929
Query 548 CGATATGCATGACGGATGCACCTTCAACCACCGATATGTAAAGTCAAATCCACATGAAGT 607
|| |||||||| || ||||| |||||||| || ||||| ||||||||||| ||||| ||
Sbjct 930 TGACATGCATGATGGGTGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCATGAGGT 989
Query 608 CGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACA 667
||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 990 CGAGAATGCTACATGGATGCTTACGGTCTTCAACTGTTTCGGAAGACAGTTCTGCTTACA 1049
Query 668 CTTTGAGGCGTTCCAGCT-GGGAATGGCTCCAGTGTACATGGCATTCCTTCG-TTTCATG 725
|||||||||||| ||||| |||| |||| |||||||||||||| || || | ||| |||
Sbjct 1050 CTTTGAGGCGTTTCAGCTCGGGA-TGGCACCAGTGTACATGGCGTTTCTAAGGTTT-ATG 1107
Query 726 GGAGATGAGAACGAGGCAAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGT 785
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| | |||
Sbjct 1108 GGAGACGAGAACGAGGCTAAGAAGTTCAGTTACAGCTTGGAAGTTGGAGCTCACAGTCGT 1167
Query 786 AAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGAC 845
||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||
Sbjct 1168 AAACTAACATGGCAAGGGATCCCAAGAAGCATCAGAGACAGTCACAGGAAAGTCCGAGAT 1227
Query 846 AGTCAAGACGGACTCATCATCCCAAGAAACCTCGCACTCTACTTCTCTGG-AGGTGATAG 904
||||||||||||||||| ||||| |||||| | || | ||||||||||| || ||| |
Sbjct 1228 AGTCAAGACGGACTCATAATCCCTAGAAACTTGGCTTTGTACTTCTCTGGCAG-TGACAA 1286
Query 905 -GCAAGAACTCAAGTTGAGAGTGACCGGGCGAATCTGGAAAGAGGAGTAA 953
| |||| ||||||||| |||| || || || || |||||||| || |||
Sbjct 1287 AG-AAGAGCTCAAGTTGCGAGTCACTGGACGGATTTGGAAAGAAGAATAA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5