BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938791
Length=220
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58080.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 202 1e-51
> AT3G58080.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:21510306-21510562 REVERSE LENGTH=165
Length=165
Score = 202 bits (109), Expect = 1e-51
Identities = 159/180 (88%), Gaps = 15/180 (8%)
Strand=Plus/Plus
Query 21 ATGGATGAAAGAAGAGCAGTGGTCCAAGTGGAGGAGTTGCATCTAAGAAAAGGAGGAAAG 80
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 1 ATGGATGAAAGAAGAGCAGTGGTCCTAGTGGACGAGTTGCATCTAAGAAAAGGAGGATAT 60
Query 81 GAAGCAGAGAAAGTGAGAGGTGTTTGTAACCAAGTGTTTGCTGTTAGGGTTTCTGAGACT 140
|||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 61 GAAGCAGAGAAAGT--GA-------G------AGTGTTTGCTGTTAGGGTTTCTGAGACT 105
Query 141 TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGCCCCCCTTTGTGTGA 200
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 106 TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGACCACCTTTGTGTGA 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9852478804
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5