BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938791 Length=220 Score E Sequences producing significant alignments: (Bits) Value AT3G58080.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 202 1e-51 > AT3G58080.1 | Symbols: | unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21510306-21510562 REVERSE LENGTH=165 Length=165 Score = 202 bits (109), Expect = 1e-51 Identities = 159/180 (88%), Gaps = 15/180 (8%) Strand=Plus/Plus Query 21 ATGGATGAAAGAAGAGCAGTGGTCCAAGTGGAGGAGTTGCATCTAAGAAAAGGAGGAAAG 80 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | Sbjct 1 ATGGATGAAAGAAGAGCAGTGGTCCTAGTGGACGAGTTGCATCTAAGAAAAGGAGGATAT 60 Query 81 GAAGCAGAGAAAGTGAGAGGTGTTTGTAACCAAGTGTTTGCTGTTAGGGTTTCTGAGACT 140 |||||||||||||| || | |||||||||||||||||||||||||||| Sbjct 61 GAAGCAGAGAAAGT--GA-------G------AGTGTTTGCTGTTAGGGTTTCTGAGACT 105 Query 141 TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGCCCCCCTTTGTGTGA 200 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 106 TTGTGGGCTTTTAAGGCCTTGTGGGGTTCAACTCCATTCACGGGGACCACCTTTGTGTGA 165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9852478804 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5