BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938800
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58140.1 | Symbols: | phenylalanyl-tRNA synthetase class II... 2065 0.0
> AT3G58140.1 | Symbols: | phenylalanyl-tRNA synthetase class
IIc family protein | chr3:21529731-21532572 REVERSE LENGTH=1733
Length=1733
Score = 2065 bits (1118), Expect = 0.0
Identities = 1260/1328 (95%), Gaps = 11/1328 (1%)
Strand=Plus/Plus
Query 15 AGACGCCATGACCATTTTCTCAGTTCAGTCCACTATCTTCAGTCGAGCTTCCGTCGTTCT 74
|||||| |||||| |||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 180 AGACGCTATGACCGTTTTCTCAGTTCAGTCCACTATCTTCAGTCGAGCCTCCGTAGCTCT 239
Query 75 TCTCTCAAGCAATGGCTTCAAACGATTTTCATTCGCTTCTTCGTTTTCTTCCTCCGCCGT 134
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TCTCTCGAGCAATGGCTTCAAACGATTTTCATTCGTTTCTTCGTTTTCTTCCTCCGCCGC 299
Query 135 TTATTCTCCACCTCTCCCCAAAATGAAGAAGCGTCGGTACCCAATCGTCTCTGCTGTTGA 194
||| |||||| | || ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 300 TTACTCTCCA-C-CT----AAAATGAGGAAGCGTCGCTACCCAATCGTCTCTGCTGTTGA 353
Query 195 TATTGGTGGCGTCACAATCTCTAGAAATGATGTGGTGAGAGATGATGATCCAACAAACAA 254
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 354 TATTGGTGGCGTCGCAATCGCTAGAAATGATGTGGTGAGAGAGGATGATCCAACAAATAA 413
Query 255 TGTACCAGACTCGATTTTCTCTAAACTAGGAATGCAGCTACACAGAAGAGATAAGCATCC 314
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTACCAGATTCGATTTTCTCTAAACTAGGAATGCAGCTACACAGAAGAGATAAGCATCC 473
Query 315 CATTGGGATCTTAAAAAATGCTATCTACAATTACTTTGATTCCAATTACTCAAAAAAGTT 374
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 474 GATTGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTT 533
Query 375 TGAGAAGTTCGAAGACCTTTCTCCTATTGTTACCACAAAGCAGAACTTTGATGATGTGCT 434
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 534 TGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAAACTTTGATGATGTGCT 593
Query 435 AGTCCCTGCTGATCATGTAAGCAGAAGCCTTAATGACACGTACTATGTAGACTCGCAAAC 494
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 594 AGTCCCTGCTGATCATGTAAGCAGAAGTCTTAATGACACGTACTATGTAGACTCACAAAC 653
Query 495 TGTTTTGAGATGCCATACAAGTGCTCACCAAGCTGAGCTGTTGAGGAAAGGTCATACTCG 554
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 TGTTTTGAGATGTCATACGAGTGCTCACCAAGCTGAGCTGTTGAGGAAAGGTCATAGTCG 713
Query 555 TTTCCTTGTTACCGGGGATGTTTACCGTAGAGATTCTATCGATTCTACTCATTATCCGGT 614
||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 714 TTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGT 773
Query 615 TTTCCATCAGATGGAAGGCTTTTGTGTTTTCTCTCCTGAGGACTGGAACGAGTCTGGCAA 674
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 TTTCCATCAGATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAA 833
Query 675 GGATTCCACTTTGTATGCTGCTGAGGATTTAAAGAAATGTCTTGAGGGATTGGCACGCCA 734
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 GGATTCCACTTTGTATGCTGCTGAGGATTTGAAGAAATGTCTTGAGGGATTGGCACGCCA 893
Query 735 CTTATTTGGTTCTGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATC 794
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTTATTTGGTTCGGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATC 953
Query 795 TTTTGAGCTTGAGATATATTTTAAGGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGAC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTTTGAGCTTGAGATATATTTTAAGGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGAC 1013
Query 855 CGAGCAAGTAATTTTGAAGCAAAGTGGATTAGAAAATAATGTTGCGTGGGCCTTCGGACT 914
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1014 CGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACT 1073
Query 915 TGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATCCCTGATATAAGATTTTTCTGGAC 974
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 1074 TGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATACCTGATATACGATTTTTCTGGTC 1133
Query 975 ATCTGATGAGCGATTCACGTCCCAGTTTGGAAAAGGAGAGCTTGGAGTGAAATTCAAGCC 1034
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1134 ATCCGATGAACGATTCACGTCCCAGTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCC 1193
Query 1035 ATATTCGAAGTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTCATTCAC 1094
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 ATATTCAAAGTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCAC 1253
Query 1095 AGAGAACAACTTTTGTGAAGTAGTCAGAGGAATTGCTGGCGATCTTGTTGAAGAGCTGAA 1154
|||||| || ||||||||||| || |||||||||||||| ||||||||||||||| ||||
Sbjct 1254 AGAGAATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGGTGAA 1313
Query 1155 GTTAATTGACCAATTCACCAAT---AAGAAAGGGATGACGAGTCATTGTTACAGAATCGT 1211
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1314 GTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGT 1373
Query 1212 GTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGAGTAAAGT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGAGTAAAGT 1433
Query 1272 GCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAGAATTTTGAAAAG--TA 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1434 GCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGAGAATTTTGAAAAGAGTA 1493
Query 1330 GAGTTGTT 1337
| ||||||
Sbjct 1494 GCGTTGTT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5