BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938801
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58150.1 | Symbols: | Optic atrophy 3 protein (OPA3) | chr3... 935 0.0
> AT3G58150.1 | Symbols: | Optic atrophy 3 protein (OPA3) | chr3:21532813-21534089
REVERSE LENGTH=736
Length=736
Score = 935 bits (506), Expect = 0.0
Identities = 591/631 (94%), Gaps = 9/631 (1%)
Strand=Plus/Plus
Query 4 GTTCTTCTTCTTCTCTCATGAGCCAGCCCAAGTCTCTGGTGCAGCAGACCATGGTCCTAC 63
|||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 1 GTTCTTTTTCTTCTCTCATGAGCCAGCCGAAGTCTCTAGTTCAGCAGACCATGGTCCTCC 60
Query 64 CGCTTCTGAAGCTAGGAACCCTAGCTCTACGCACTATCTGCAAACCTATCGCTAATC-GC 122
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| | |
Sbjct 61 CGCTTCTGAAGCTAGGAACCCTAGCTCTTCGAACTATCTGCAAACCCATCGCTAACCAG- 119
Query 123 CTTAAGAAAGAAGCTGGTGTTAATCCCAAATTCCGTCAATTCATCATCAACATTGCACAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTAAGAAAGAAGCTGGTGTTAATCCCAAATTCCGTCAATTCATCATCAACATTGCACAG 179
Query 183 GCGAATCACAGATTTACGACTAAGTTACAAAGACGTGCTTCTGGTCGTGTAACTGATGCA 242
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GCGAATCACAGATTTACTACAAAGTTACAAAGACGTGCTTCTGGTCGTATAACTGATGCA 239
Query 243 GTTATTCGCCCTTTGAACGAAGAGAGAGCTGTTCAAGCCGCTGCAGATCTTCTTGGGGAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTATTCGCCCTTTGAACGAAGAGAGAGCTGTTCAAGCCGCTGCAGATCTTCTTGGGGAA 299
Query 303 CTCTTCGCCTTCACGGTTGCAGGAGCTGCTCTTGTCTATGAGGTGCAGAGAAATGCCAGA 362
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 CTCTTTGCCTTCACGGTTGCAGGAGCTGCTCTTGTCTATGAAGTGCAGAGAAATGCCAGA 359
Query 363 GGAGAAGCGAAAAAAGAAGAGAAACGACAACAAGAACTAGCTGAATTCAGACGTAAACAT 422
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 GGAGAAGCGAAAAAAGAAGAGAAACGACAACAAGAACTAGCGGAATTCAGACGTAAACAT 419
Query 423 GAGAAGATGGAGAACGAAATCGAAGAGATGAAACAAAGATGCTGCCTGCTTCATGAAGAG 482
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GAGAAGATGGAGAACGAAATCGAAGAGATGAAACAAAGATGCTGTTTGCTTCATGAAGAG 479
Query 483 CTTTCTAAGCCGGTTAATAAAGAGCTTTCTAAGCCGCTTAATGCAGAGGTCTCTAAGCCA 542
|||||||||||| ||||| || ||| ||||||||| ||||||| |||||| |||||||||
Sbjct 480 CTTTCTAAGCCGATTAATGAACAGCCTTCTAAGCCTCTTAATGAAGAGGTATCTAAGCCA 539
Query 543 ACAGGATTAGCTTGGCTCTT-CAACTACATGTGTTGTCAGAGTGCTGCTGCTGAGAAAGT 601
| ||||||||||||||| || |||||||||||||| ||||| |||||||| || ||| |
Sbjct 540 AGAGGATTAGCTTGGCT-TTACAACTACATGTGTTATCAGAATGCTGCTGA-GA-AAA-T 595
Query 602 ACAGTAGCAAAGCT-AAAAAAT-AAAAGCCT 630
| ||||||| |||| |||||| ||||||||
Sbjct 596 AAAGTAGCAGAGCTTAAAAAAACAAAAGCCT 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5