BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938805
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58180.1 | Symbols: | ARM repeat superfamily protein | chr3... 1528 0.0
> AT3G58180.1 | Symbols: | ARM repeat superfamily protein | chr3:21544097-21546180
FORWARD LENGTH=1236
Length=1236
Score = 1528 bits (827), Expect = 0.0
Identities = 925/973 (95%), Gaps = 4/973 (0%)
Strand=Plus/Plus
Query 1 CGACGAAGCTGATTTAGTGAATATGGAATCTAATGGATCAGTTTCATCGACGGTTAACTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 71 CGACGAAGCTGATTTAGTGAATATGGAATCTAATGGATCAGTTTCATCGATGGTTAACTT 130
Query 61 GGAGAAGTTTCTCTGCGAGCGATTGGTGGACCAGTCGCAACCGATCTCGGAGCGATTTAG 120
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 131 GGAGAAGTTTCTCTGTGAGCGATTGGTGGACCAGTCACAACCAATCTCGGAGCGATTTAG 190
Query 121 AGCTCTCTTCTCCCTTCGTAACTTGAAAGGCCCAGGACCTCGCAACGCTCTAATCCTCGC 180
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 191 AGCTCTCTTCTCTCTTCGCAACTTGAAAGGCCCAGGACCTCGCAACGCTCTAATCCTTGC 250
Query 181 ATCCAGAGACTCATCTAATTTGTTAGCACATGAAGCTGCTTTTGCATTGGGTCAGATGCA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 251 ATCCAGAGACTCATCTAATTTGTTAGCACATGAAGCTGCATTTGCATTGGGTCAGATGCA 310
Query 241 AGATGCTGAAGCCATTCCTGCTCTTGAGTCCGTTCTTAATGATATGTCTTTGCATCCAAT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 311 AGATGCTGAAGCCATTCCTGCTCTTGAGTCGGTTCTTAATGATATGTCTTTGCATCCAAT 370
Query 301 TGTACGACATGA-GTTGACAGAAGCCCTTGGAGCTATTGGTCTGGCGGGTAATGTTGACA 359
||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 371 AGTACGACATGAGGCAG-CAGAAGCCCTTGGAGCTATTGGTTTGGCGGGTAATGTTAACA 429
Query 360 TTTTAAAGAAAAGCTTGAGTTCGGATCCAGCTCAAGAGGTACGGGAAACATGTGAATTAG 419
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 430 TTTTAAAGAAAAGCTTGAGCTCGGATCCAGCTCAGGAGGTTCGGGAAACATGTGAATTAG 489
Query 420 CTCTCAAAAGGATTGAAGAGTTGAGTAATGTTGATGCCGAGAACCAGTCATCAACTG-CA 478
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||
Sbjct 490 CTCTCAAAAGGATTGAAGACATGAGTAACGTTGATGCCGAGAACCAGTCATCAAC-GACA 548
Query 479 GAGAAATCTCCTTTCATGTCTGTTGACCCAGCAGGGCCAGCTGCTTCTTTCTCTTCTGTC 538
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 549 GAGAAATCACCTTTCATGTCTGTTGACCCAGCAGGCCCAGCTGCGTCTTTCTCTTCTGTT 608
Query 539 CACCAACTGAGGCAAATTCTTTTGGATGAAACAAAAGGCATGTATGAGAGATATGCTGCA 598
|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 CACCAACTCAGGCAAGTTCTCCTGGATGAAACAAAAGGCATGTATGAGAGATATGCTGCA 668
Query 599 CTTTTCGCTCTAAGGAATCATGGCGGAGAGGAAGCTGTTTCCGCCATAGTTGACTCTTTG 658
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 669 CTGTTCGCTCTAAGGAATCATGGTGGAGAGGAAGCTGTTTCTGCCATAGTTGATTCTTTG 728
Query 659 AGTGCTAATAGTGCCCTTCTACGTCACGAGGTTGCTTATGTCTTAGGCCAATTGCAAAAT 718
||||||| |||||||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 729 AGTGCTAGTAGTGCCCTTCTACGTCACGAGGTTGCTTATGTCTTGGGTCAGTTGCAAAGT 788
Query 719 AAAACCGCTTTAGCTACTCTAAGCAAAGTACTGAGAGATGTGAATGAGCACCCAATGGTT 778
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 789 AAAACTGCTTTAGCTACTCTAAGCAAAGTACTTAGAGATGTGAATGAGCACCCAATGGTT 848
Query 779 AGACATGAGGCTGCAGAAGCGCTTGGTTCTATTGCAGATGAGCAGAGCATTGCTTTGCTA 838
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 849 AGACATGAGGCTGCAGAAGCGCTTGGTTCTATTGCTGATGAACAGAGCATTGCTTTGCTA 908
Query 839 GAAGAATTCTCAAGGGACCCTGAGCCAATTGTTGCACAAAGCTGTGAAGTAGCATTGAGT 898
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GAAGAATTCTCAAAGGACCCTGAGCCAATTGTTGCACAAAGCTGTGAAGTAGCATTGAGT 968
Query 899 ATGTTGGAATTTGAAAATTCCGGGAAATCGTTTGAGTTCTTTTTCACACAAGACCCGCTT 958
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 969 ATGTTGGAATTTGAAAATTCCGGGAAATCGTTTGAGTTTTTTTTCACGCAAGACCCGCTT 1028
Query 959 GTTCACTAAGAAT 971
|||||||||||||
Sbjct 1029 GTTCACTAAGAAT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5