BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938812
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35530.1 | Symbols: | phosphatidylinositolglycan-related | ... 279 1e-74
AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORW... 220 9e-57
AT4G16150.1 | Symbols: | calmodulin binding;transcription regu... 108 7e-23
AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-16... 93.5 2e-18
> AT4G35530.1 | Symbols: | phosphatidylinositolglycan-related
| chr4:16871734-16873652 REVERSE LENGTH=1151
Length=1151
Score = 279 bits (151), Expect = 1e-74
Identities = 171/181 (94%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 235 AGTGAAAGTAAGTCAACTAGAGAAGCCATTGACATTCATCATGTGATTATCAACGGAGGC 294
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 421 AGTGGAAGTAAGTCAACTAGAGAAGCCATTGATATTCACCATGTGATTATCAACGGAAGC 480
Query 295 AGAGCAACTGGTTATGCCCGTCGTAGGGGGATTGGTTTCTTCCTTGTGCTTCTGGCGAGT 354
|| | ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 481 AGCGGAACTGGTTATGCCCGTCGTTGGGGGCTTGGTTTCTTCCTTGTGTTTCTGGCGAGT 540
Query 355 TCTATGTACTTTTTTCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTT 414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTATGTACTTTTTGCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTT 600
Query 415 T 415
|
Sbjct 601 T 601
> AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORWARD
LENGTH=626
Length=626
Score = 220 bits (119), Expect = 9e-57
Identities = 130/135 (96%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 419 TTTGGTCAAGATGTCTACTGCATTTCTATTCTCTCCTATCTCATTCCTCTTTATTTACTT 478
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTT-GTCAAGAAGTCTACTGCATTTCTATTCTCTCCTATCTCATTCCTCTTTATTTACTT 544
Query 479 GCTTTCACATGGTAAGGAATTGTGAATATATGGTCTCAGCCTCTCATGTTAGACAATTCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 GCTTTCACATGGTAAGGAATTGTGAATATATGGTCTCAGCCTCTCATGTTAGACATTTCT 604
Query 539 TCTAAAATTCTCATT 553
|||| |||||||||
Sbjct 605 TCTATGATTCTCATT 619
Score = 130 bits (70), Expect = 2e-29
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 3 GGACTTACCTGAAACGGAGATGGCCGACGTTGATTCCGGTAGGCTTATCGGCTCTGAGAT 62
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 90 GGACTTACCTGAAAC-GAGCTGGCCGACGTTGATTTCGGTAGGCTTATCGGCTCTGAGAT 148
Query 63 TCATGGATTCCATATTTTGCAAG 85
|||||||||||||| ||||||||
Sbjct 149 TCATGGATTCCATACTTTGCAAG 171
> AT4G16150.1 | Symbols: | calmodulin binding;transcription regulators
| chr4:9148059-9153292 FORWARD LENGTH=3182
Length=3182
Score = 108 bits (58), Expect = 7e-23
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 1 TCGGACTTACCTGAAA-CGGAGATGGCCGACGTTGATTCCGGTAGGCTTATCGGCTCTGA 59
|||| | || |||||| |||||||||||| |||||||||||| | |||||||||||||||
Sbjct 145 TCGGCCGTATCTGAAACCGGAGATGGCCGGCGTTGATTCCGGCAAGCTTATCGGCTCTGA 204
Query 60 GATTCATGGATTCCATATTTTGCAAG 85
||||||||||||||||| ||| ||||
Sbjct 205 GATTCATGGATTCCATACTTTACAAG 230
> AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-1606703
REVERSE LENGTH=477
Length=477
Score = 93.5 bits (50), Expect = 2e-18
Identities = 57/60 (95%), Gaps = 1/60 (2%)
Strand=Plus/Minus
Query 7 TTACCTGAAACGGAGATGGCCGACGTTGATTCCGGTAGGCTTATCGGCTCTGAGATTCAT 66
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 TTACCTGAAAC-GAGCTGGCCGACGTTGATTTCGGTAGGCTTATCGGCTCTGAGATTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5