BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938815
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58260.1 | Symbols: | TRAF-like family protein | chr3:21573... 1090 0.0
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 231 8e-60
> AT3G58260.1 | Symbols: | TRAF-like family protein | chr3:21573754-21575369
REVERSE LENGTH=1221
Length=1221
Score = 1090 bits (590), Expect = 0.0
Identities = 693/741 (94%), Gaps = 14/741 (2%)
Strand=Plus/Plus
Query 318 CTTGATTGCCAAGACTCTTCATCTAGATCAATAAGG-AAGCAAGTTAATAACACGTTCAC 376
|||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 226 CTTGATTGCCAAGACTCTTCATCTAGATCAAT-GGGAAAGCAAATAAATAACACGTTCAC 284
Query 377 TTGGGTGATTAAGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGT 436
|||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 285 TTGGGTGATTAAGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGT 344
Query 437 TGTTGGTGGCTGCAAATGGCGTCTAATTGCCTATCCAGAAGTTAACAATGTTGATGGTTA 496
||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct 345 TGTTGGTGGCTGCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTA 404
Query 497 CTTGTCTTTGTCTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 556
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 405 CTTGTCTTTGTCTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATG 464
Query 557 GAAAAGGCATGCAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAATTCTCCCA 616
||||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||
Sbjct 465 GAAAAGGCATGCAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCA 524
Query 617 ACTGCAAGAAACACAA-CAGTGGTTTGATCAGAACGCTCCTGGATGGGGTTTTCCACCAA 675
| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 525 AGTGCAAGAAACACAAGC-GTGGTTTGATGAGAACGCTCCTGGATGGGGTTTTCCACCAA 583
Query 676 TGCTAAACCTTAAAGATGTTTCTGACAAACATGGTGGATTCCTGGTGAACGACGAAGTCA 735
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 584 TGCTAAACCTTAAAGATGTTTCTGACAAATATGGTGGATTCCTGGTGAACGACGAAGTCA 643
Query 736 TGGTTGCTGTTGCGGTAGATGTTCTTGAAGTTGTTGGCTCATTAGATGCACCAGAGAAGT 795
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 644 TGGTTGCTGTTGCGGTAGATGTTATTGAAGTTGTTGGTTCATTAGATGCACCAGAGATGT 703
Query 796 CTGAAAGCATGGATATCAAAGGGTTTCAAGTTCTTCCTTCACAGGTTG-AATCTGTGAAC 854
|||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 704 CTGAGAGCATGGATATCAAAGGGTTTAAAGTTCTTCCTTCACAGG-TGAAATCTGTGAAC 762
Query 855 CGTTTGTTTGAGAGACACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 914
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CGTTTGTTTGAGAGTCACCCAGACATTGCATCAAAGTTCAGTATAAAGAACCAATCTTTG 822
Query 915 AAGACAGCGTACATGAATGTCCTACTCTGCTTGAACGAGACTCTGCACCAGTCACCTAAG 974
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |
Sbjct 823 AAGACAGCGTACATGAATGTCCTACTCTGCTTGGCCGAGACTCTGCACCAATCGCCTATG 882
Query 975 GAAATCTCCGAGGATGATCTGTCTGATGCCGTGATGCGAAAACTACTCTGGCCTACATAA 1034
||||||||||||||||||||||||||||| | | ||| |||||||||||||||| |
Sbjct 883 GAAATCTCCGAGGATGATCTGTCTGATGC-G--A----AAA-CTACTCTGGCCTACATGA 934
Query 1035 AAAATGTAGGATTTAAGCTGG 1055
||| |||||||||||||||||
Sbjct 935 AAAGTGTAGGATTTAAGCTGG 955
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 231 bits (125), Expect = 8e-60
Identities = 227/275 (83%), Gaps = 12/275 (4%)
Strand=Plus/Plus
Query 49 TAACCCATAA-GCTATGCCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGTA 107
||||||| || | |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 880 TAACCCA-AACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCA 938
Query 108 GACATTGCACTGACATACATGACAGATGCAGGGTTTAA-TATGGACTGGTTggagaagaa 166
| | |||| || |||| ||| ||| ||||||||| | | |||| ||||||||||||||
Sbjct 939 GGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGT-TGGATTGGTTGGAGAAGAA 997
Query 167 a-ttggaggaagtaaaggaaaagaaagagaaagaggaagCTTGTTTGACTCG-GCTGCAA 224
| || | |||||||||||||||||| ||||||| || ||||||||| | || | | |||
Sbjct 998 ACTTA-ATGAAGTAAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGGC-CGAGATACAA 1055
Query 225 GAAATGGAGGAATCGAT-T-AAGCCCTTGAAGCAGGAGTTCTTAAAGCAAGAAGCTGAGA 282
|| ||||| ||| | || | ||||| |||||| || ||| |||| | | |||||| |||
Sbjct 1056 GACATGGACGAA-C-ATGTTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTCAGA 1113
Query 283 TAGATAAGGAGAAGGCAGAGTTGTTGGCTGCAAGA 317
|||||||| |||||||||||||| | |||||||||
Sbjct 1114 TAGATAAGAAGAAGGCAGAGTTGCTAGCTGCAAGA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51741171410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5