BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938817
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protei... 824 0.0
AT3G58360.1 | Symbols: | TRAF-like family protein | chr3:21593... 220 2e-56
> AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:21575887-21577845
REVERSE LENGTH=1249
Length=1249
Score = 824 bits (446), Expect = 0.0
Identities = 541/587 (92%), Gaps = 5/587 (1%)
Strand=Plus/Plus
Query 433 GGAAAATTAGACGTACCAGCGAAATGTGAAGAGACAACCAAAGTTCTAAGCAATGTAGAG 492
|||||| | |||||||||| | ||| |||||||||||| |||| ||||||||| |||||
Sbjct 545 GGAAAA-T-GACGTACCAGAGGAATCTGAAGAGACAACTAAAGCTCTAAGCAAGGTAGAC 602
Query 493 GAAAATGATGGTGCAGAGTCTTCTAATGATTCACTCAAGGAAGCTTCATCAGTAAAAGAA 552
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 603 GAAAACGATGGTGCAGAG---TCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGAA 659
Query 553 AGCATAGATGTCAACGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTTTATA 612
||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 AGCATGGATGTTAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTATA 719
Query 613 TTTGAAAGACACCCCGACATTGCGTCAGAGTTCCGTCCAAGGAATCAGCATTTGAGGTCA 672
|||||||||||||||||||| || ||||||||| |||||| |||||||||| ||||||||
Sbjct 720 TTTGAAAGACACCCCGACATAGCATCAGAGTTCGGTCCAAAGAATCAGCATCTGAGGTCA 779
Query 673 GCTTACATGAATGTCCTCCTCAGCCTAATTGAGACGCTGTGCCAATCGACTCAGGAACTT 732
||||||||||| ||||| ||||||||||| |||| ||||||| |||||||||||||||
Sbjct 780 GCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACTT 839
Query 733 TCCAAGGATGATCTGGCAGACGCAGACGCTGCTCTTGCATACTTGACAGACGCAGGGTTG 792
||||||||||||||| |||||||||| |||||||||||||||||||| || || ||||||
Sbjct 840 TCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACGGATGCGGGGTTG 899
Query 793 AATCTGAATTGGTTGGAAGAGAAACTGGAAGAAGTATCAGAAAAGAAGGAGAACGAGGAA 852
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 AATCTAAATTGGTTGGAGGAGAAACTGGAAGAAGTGTCAGAAAAGAAGGAGAACGAGGAA 959
Query 853 GCTGGTGAGACTCGGGTGCAAGAAATAGAGGAAGAGTTGAAGGAATTGAAGCTGAAGTGC 912
|||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 960 GCTGGTGAGACTCGGGTGCATGAAATTGAAGAAGAGTTGAAGGAATTAAAGCTGAAGTGC 1019
Query 913 TCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAAATGTGTCTGTGGCCAGAGCTCCT 972
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 TCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAGATGTGTCTGTGGCCAGAGCTCCT 1079
Query 973 TTCTCGTTCGATGATGTTGTTTAATGGCTTCAGTATTCAGATTCCTT 1019
||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 TTCTCCTTCGATGATATTGTTTAATGGCTTCAGTATTCAGATTCCTT 1126
Score = 617 bits (334), Expect = 5e-176
Identities = 452/507 (89%), Gaps = 15/507 (3%)
Strand=Plus/Plus
Query 3 AGCTTGATCGCAGAGAACAATGGGGAAAGAAGTTGATAAGAAGTTCACTTGGTTGATTAA 62
|||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 53 AGCTTGATTGCAGATAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAA 112
Query 63 GAATTTCTGCTCTCAGCAATCCA-CAAAAATTTACTCTGATGAATT-TGTCGTCGACGGC 120
|||||||| ||||||||| |||| ||||| ||| ||||||||||| | ||||||| |||
Sbjct 113 GAATTTCTCCTCTCAGCAGTCCAGGAAAAA-TTATTCTGATGAATTCT-TCGTCGATGGC 170
Query 121 TGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTAAGCATTTGTCACTGTAT 180
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 171 TGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTAT 230
Query 181 CTGGACGTTCCTGGTAGTCAATTTTTACCTGATGGATGGAGAAGACACGCAGATTTTCAC 240
|||| |||| |||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 231 CTGGCCGTTGCTGGTAGTGAATTTTTACCTGATGGATGGAGAAGACACGCATATTTCCAC 290
Query 241 TTAAGTGTAGTGAATCAACACTCTGAAGAACTCTCTCTAACCAA-AGCAACACAACAAT- 298
|| |||||||||||||||| |||||| |||||||||| || | | || |||| || |||
Sbjct 291 TTCAGTGTAGTGAATCAACTCTCTGATGAACTCTCTC-AAGCTAGAGAAACAAAA-AATT 348
Query 299 GGTTTGATGCCACTGCTTGCGACTGGGGTTTTACATCAATG-TTTCCCCTTAACAAACTT 357
|||||||||| | | || | ||||||||||||||||||||| |||||| |||| ||||||
Sbjct 349 GGTTTGATGCGAGTACTAGTGACTGGGGTTTTACATCAATGCTTTCCC-TTAAAAAACTT 407
Query 358 CATGACAAAGATGGTGGATTCCTGGTTAACGGAGAGCTCAAGATTGTTGCCGAGGTATCT 417
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||
Sbjct 408 CATGACAAAGATGGTGGATTCCTGGTTAATGGAGAGCTCAAGATTGTTGTCGATGTTTCT 467
Query 418 GTTCTTGAAGTTATTGGAAAATTAGACGTACCAGCGAAATGTGAAGAGACAACCA--AA- 474
||||||||||||||||| |||||||||||||||| | ||| |||||||||||||| ||
Sbjct 468 GTTCTTGAAGTTATTGGCAAATTAGACGTACCAGTGGAATCTGAAGAGACAACCACCAAA 527
Query 475 GTTCTAAGCAATG-TAGAGGAAAATGA 500
| ||||||| | | |||||||||||||
Sbjct 528 GCTCTAAGCGA-GCTAGAGGAAAATGA 553
> AT3G58360.1 | Symbols: | TRAF-like family protein | chr3:21593505-21594866
REVERSE LENGTH=897
Length=897
Score = 220 bits (119), Expect = 2e-56
Identities = 366/483 (76%), Gaps = 25/483 (5%)
Strand=Plus/Plus
Query 527 TCA-AGGAAGCTTCATCAGTAAAAGAAAGCATAGATGTCAACGGCTTTCGAGTTCTTCCT 585
||| ||||| ||||| || ||| |||||||| ||| | || ||||||| | |||||||
Sbjct 427 TCAGAGGAAACTTCAACAATAATGGAAAGCATGGATTTTAATGGCTTTCAACTTCTTCCC 486
Query 586 TCACAGGTGGAAACTGTGA-GCTTTATATTTGAAAGACACCCCGACATTGCGTCAGAGTT 644
||||||||||| ||||| || ||| ||||||| |||||| || ||||| || || ||
Sbjct 487 TCACAGGTGGACTTTGTGAGGC-ATATGTTTGAAAAACACCCAGAGATTGCATCTGAATT 545
Query 645 CCGTCCAAGGAA-TCAGCAT-TTGAGGTCAGCTTACATGA-ATGTCCTCCTCAGCCTAAT 701
|||| || ||| || || || ||| ||| |||||||| | | || ||||| || ||
Sbjct 546 CCGTTTAAAGAACCCA-AATCTT-AGGGCAGGTTACATGAGCT-TGCTACTCAGTCTCAT 602
Query 702 TGAGACGCTGTGCCAATCGACTCAGGAACTTTCCAAGGATGATCTGGCAGACGCAGACGC 761
|||||| ||| |||| ||| ||||||| || ||||| |||||| || || | | | |
Sbjct 603 TGAGACTCTGCGCCAGTCGCCTCAGGAGCTCAACAAGGTTGATCTAGCTGAGGGATATGT 662
Query 762 TGCTCT-TGCATACTTGACAGACGCAGGGTTGAA--TCTGAATTGGTTGGAAG-AGAAAC 817
||| || | || | | || || || || || || | || ||||||||| || ||||||
Sbjct 663 TGCACTCAG-ATCCATAACTGATGCTGGATTTAAGGT-TG-ATTGGTTGG-AGAAGAAAC 718
Query 818 TGGAAGAAG-TATCAGAAAAGAAGGAGAACGAGGAAGCTGGTGAGACTCGGGTGCAAGAA 876
| | | || |||||||||||||| | || ||||| |||||||| |||||| |||| |||
Sbjct 719 TTGTTG-AGATATCAGAAAAGAAGAATAAAGAGGAGGCTGGTGAAACTCGGATGCAGGAA 777
Query 877 AT-AGAGGAAGAG-TTGAAGGAATTGAAGCTGAAGTGCTCAAACCTGGAAGCTCAGCTGG 934
|| | | |||||| | ||| | ||||| | ||| |||| | ||||||||||||||||||
Sbjct 778 ATCA-ATGAAGAGCTGGAAAG-TTTGAAACAGAAATGCTTAGACCTGGAAGCTCAGCTGG 835
Query 935 AGAAGGAGAAAGCAAATGTGTCTG-TGGCCAGAGCTCCTTTCTCGTTCGATGATGTTGTT 993
|||||||||||||| | || | || || | | | ||||| | || ||| |||||||| ||
Sbjct 836 AGAAGGAGAAAGCAGAGGTCTTTGCTG-CAAAATCTCCTCTATCATTCAATGATGTTTTT 894
Query 994 TAA 996
|||
Sbjct 895 TAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5