BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938818
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58280.1 | Symbols: | Arabidopsis phospholipase-like protei... 963 0.0
AT3G58260.1 | Symbols: | TRAF-like family protein | chr3:21573... 470 1e-131
> AT3G58280.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:21578512-21579767
REVERSE LENGTH=951
Length=951
Score = 963 bits (521), Expect = 0.0
Identities = 618/665 (93%), Gaps = 5/665 (1%)
Strand=Plus/Plus
Query 298 AAGGATGGCGCTGGTTTGATGAGAACACAAAGATTTGCGGTTTTAGAGACATGATTCCCG 357
|||||||||||||||||||||||||||| |||| ||| || |||| ||||||||||||||
Sbjct 206 AAGGATGGCGCTGGTTTGATGAGAACACTAAGAATTGGGGGTTTAAAGACATGATTCCCG 265
Query 358 TAGTCAACCTTCATAACATAAATGGTGGGTTCTTGTTGAATGGGGAGCTCACGATTATTG 417
||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 266 CAGTCATCCTTAATAACGTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTG 325
Query 418 CTGAAGTTGAAGTTCATGAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACT 477
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 326 CTGAAGTTGAAGTTCATGAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C- 382
Query 478 TTAGTGATGATTCCTCTGAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACG 537
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 383 TTAGTGATGATTCCTCTGAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACG 442
Query 538 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTGAATGCAATCTTTGAGAAACATCCAG 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 443 GCTTTCAGGTTCTTGATTCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAG 502
Query 598 ATCTCACGTCGAATTTCAATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTC 657
|||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 503 ATCTCATATCGAATTTCAGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTC 562
Query 658 TTCTTGACCTAATC-AAGACACTCTGCAAATCTCCTAAGGACCTCACCGTAGAAGACATG 716
|||||||||| | | |||||||| | ||||||| ||||||| ||||| || |||||||||
Sbjct 563 TTCTTGACCTTA-CGAAGACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATG 621
Query 717 AACAAAGCAGACAATACGCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTG 776
||| |||||||||||||| |||| |||||| | |||||||||||||||||||| ||||||
Sbjct 622 AACGAAGCAGACAATACGATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTG 681
Query 777 AGTCATAAGTTGGATCAGGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAA 836
|||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 682 CGTCAGAAGTTTGATCAGGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAA 741
Query 837 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CTCGAGAAACAGGTCAAGAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAG 801
Query 897 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATATTGTTTGACTAAGATTTTAAGATGAAG 956
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 802 AAAGAGAAAGCTGCAGCTTCGGCTTCATTGATGTTGTTTGACTGAGATTTTAAGATGAAG 861
Query 957 TTGTG 961
|||||
Sbjct 862 TTGTG 866
> AT3G58260.1 | Symbols: | TRAF-like family protein | chr3:21573754-21575369
REVERSE LENGTH=1221
Length=1221
Score = 470 bits (254), Expect = 1e-131
Identities = 301/324 (93%), Gaps = 2/324 (1%)
Strand=Plus/Plus
Query 1 AAGACTCTTCATCTAGATCAATGGGGAAGCAAGTTAATAACACGTTCACTTGGGTGATTA 60
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 236 AAGACTCTTCATCTAGATCAATGGGAAAGCAAATAAATAACACGTTCACTTGGGTGATTA 295
Query 61 AGAATGTCTCCACTCTGCAAGGTCAGGAAGTTCGTTCTGAAATTTTCGTTGTTGGTGGCT 120
||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 296 AGAATCTCTCCACTCTGCAAGGTCTTGAAGTTCGTTCTAAAATTTTCGTTGTTGGTGGCT 355
Query 121 GCAAATGGCGTCTTATTGCCTATCCAGAAGTTAACAATGTTGATGGTTACTTGTCTTTGT 180
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 356 GCAAGTGGCGTCTTATTGCCTATCCAGAAGTTAACGATGCCGATGGTTACTTGTCTTTGT 415
Query 181 CTGTGTATCTGGACGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTGTGTATCTGGGCGTTCCTGATTGTTGTGAGTCTTTGCCTTCTGGATGGAAAAGGCATG 475
Query 241 CAAAATTTTCCCTAACTATAGTAAATCAAATTTCAGAAGAACTCTCCCAACTGCAAGAAG 300
|||| ||||||||||||||||| |||||| ||||||||| |||||||||| ||||||||
Sbjct 476 CAAAGTTTTCCCTAACTATAGTTAATCAACTTTCAGAAGGACTCTCCCAAGTGCAAGAAA 535
Query 301 GATG-GCGCTGGTTTGATGAGAAC 323
| ||| |||||||||||||||
Sbjct 536 CACAAGCG-TGGTTTGATGAGAAC 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5