BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938826
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58330.1 | Symbols: | Arabidopsis phospholipase-like protei... 405 2e-112
> AT3G58330.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr3:21587362-21588002 REVERSE LENGTH=522
Length=522
Score = 405 bits (219), Expect = 2e-112
Identities = 359/424 (85%), Gaps = 20/424 (5%)
Strand=Plus/Plus
Query 110 TTCGGCGGACGATGATGAAACAGTTAAAGTCAATGGGTTTCATGTTC-GCGTTTCTCAAG 168
|||| |||| ||||| ||||| ||| ||||||||||||||||||||| | ||| ||||
Sbjct 66 TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTC-CTTCACAAG 124
Query 169 TAAACAGGGTTAAG-GACATGTTTATAAAACATCCAAATCTCACTTCAAAAATCAATTTA 227
||| || | || | ||||| | |||||||||| |||| |||||||| | |||||
Sbjct 125 AAAATTTGG-TCAGTCAAATGTTAAAAAAACATCCAGATCTGACTTCAAACTTTGATTTA 183
Query 228 AAGAA-CAAACAGCTTAA-AAGTGCTTACATGGATGTCCTTC-TCGACCTAA-TCGAGAC 283
||||| | |||| ||||| || ||||||||||||||||| || ||||| ||| | |||||
Sbjct 184 AAGAATC-AACAACTTAAGAA-TGCTTACATGGATGTCC-TCGTCGACATAAGT-GAGAC 239
Query 284 ACTGTGCCAGTCAACAAAAG-AGCTGTCCATGAAAGACCTAAACAAAGCAGACAATACGC 342
| ||| |||||| ||||| | | || |||||| |||||||| | |||||||| | |||||
Sbjct 240 ATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGC 298
Query 343 TTTTTGATCTTACTAGAGCAGGCTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAGG 402
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 299 TTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAG 358
Query 403 CTTACTTGAAGAAGGAGAAACAGAGATTTAGTGGTG-CCAGGATCAGAGAACTCGAGGAA 461
||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 359 CTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCC-GGATCAGAGAACTCGAGGAA 417
Query 462 CAGGTCAAGAAGCGAAAGCTGACTTTGTCT-AGTTTGGAATCC-ACACTTAAGAAAGAGA 519
|||||||| ||||||||||| |||||||| | |||||||||| || ||||| |||||||
Sbjct 418 CAGGTCAATAAGCGAAAGCTTACTTTGTCCGA-TTTGGAATCCGAC-CTTAAAAAAGAGA 475
Query 520 AAGC 523
||||
Sbjct 476 AAGC 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28482761349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5