BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938827

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58330.1 | Symbols:  | Arabidopsis phospholipase-like protei...   309    2e-83


> AT3G58330.1 | Symbols:  | Arabidopsis phospholipase-like protein 
(PEARLI 4) family | chr3:21587362-21588002 REVERSE LENGTH=522
Length=522

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 255/297 (86%), Gaps = 8/297 (3%)
 Strand=Plus/Plus

Query  144  AATCAACAGCTCAAGAATGCTTTTATTGATGTCCTCCTCAACCTAA-TCGAGACACTGTG  202
            |||||||| || ||||||||||  || ||||||||| || || ||| | |||||| ||| 
Sbjct  187  AATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGT-GAGACATTGTC  245

Query  203  CCAGTCAACAACA-G-AGCTTTCCTTAGAAGACCTAAACAAAGAAGAGAGTACCCTTTTT  260
            |||||| |||| | | | |||||| | ||||||||| | |||| ||||||||| ||||||
Sbjct  246  CCAGTCGACAA-AGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTACGCTTTTT  303

Query  261  GATCTTACTAGAGCAGGCTTGGAAGTGGGTTGGTTGCGTCAGAAGTGGGACGTAGCTTAC  320
            |||||||| | |||||| ||| |||||||||||||||||||||||| ||| | |||||||
Sbjct  304  GATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATGAAGCTTAC  363

Query  321  TTGAAGAAGGAGAAACAGAGAGTTACTGGGGCCCGGATCAGAGAACTCGAGGAACAAGTC  380
            |||||||| |||||||||||| ||| ||| | |||||||||||||||||||||||| |||
Sbjct  364  TTGAAGAAAGAGAAACAGAGAATTAGTGGTGTCCGGATCAGAGAACTCGAGGAACAGGTC  423

Query  381  AGGAAGCGAAAGCTGT-CTTTGTCCGATTTGGAATCCGACCTTAAGAATGAGAAAGC  436
            |  ||||||||||| | |||||||||||||||||||||||||||| || ||||||||
Sbjct  424  AATAAGCGAAAGCT-TACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAGAAAGC  479


 Score = 75.0 bits (40),  Expect = 6e-13
 Identities = 50/55 (91%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  89   GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTGAGGTCCTTGTTTCACAA  143
            ||||||||||||||||||||||||||||||||||||| | || |||  |||||||
Sbjct  69   GTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCCTTCACAA  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5