BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938833

Length=1324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58320.1 | Symbols:  | Ubiquitin-specific protease family C1...   429    3e-119


> AT3G58320.1 | Symbols:  | Ubiquitin-specific protease family 
C19-related protein | chr3:21585567-21586328 REVERSE LENGTH=675
Length=675

 Score =  429 bits (232),  Expect = 3e-119
 Identities = 383/456 (84%), Gaps = 10/456 (2%)
 Strand=Plus/Plus

Query  854   GGAAACCATGGACGTTAATGGTTTTCACGTTTTTCCTTCACATGTAGAATCGGTGAGCCA  913
             ||||||||| || || ||||||||||| ||| || ||||||| ||| |||| ||||||||
Sbjct  225   GGAAACCATTGATGTCAATGGTTTTCAGGTTCTTGCTTCACAAGTACAATCAGTGAGCCA  284

Query  914   TATCTTTAAAAGACACCCGGACATAGCATTAGGCTTCCGTCCTAAGAACCAACAGATCAG  973
              ||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct  285   AATCTTCAAAAGACACCCGGACACAGCAATAGGTTTCCGTCCTAAGAACCAACAGATCAG  344

Query  974   AAAAGCTTACATGAATGAACTCCTTAG-CGTCATCGATATGCTGTGCCAGCCACCGGAAA  1032
             |||||| |||||| ||| ||| ||||| | |||| || |   |||||||| | || || |
Sbjct  345   AAAAGCATACATGGATGCACTTCTTAGTC-TCATTGAGACATTGTGCCAGTCTCCAGATA  403

Query  1033  AGCTCTCCGAGGATGATCTGAGCAATGCTGATGTCACACTTGTTGATCTGATTGATGCTG  1092
             ||||||| || ||||||||||| ||||||||||  |||||||| ||||||||||||| ||
Sbjct  404   AGCTCTCTGATGATGATCTGAGTAATGCTGATGAGACACTTGTCGATCTGATTGATGTTG  463

Query  1093  GCTTTAAGTTGGATTGGCTGAAGACAAAGCTTGA-TGATATCTCTGAAAAGAAGAAGATA  1151
             ||||||| ||||||||||||||||| ||||| || |||| ||||||||||||||||| | 
Sbjct  464   GCTTTAAATTGGATTGGCTGAAGACGAAGCT-GAATGATGTCTCTGAAAAGAAGAAGTTG  522

Query  1152  GAGCAGGGTTGTGGGGCCCGGCTACAAACAATGGAGGAACAGTTGCAGAATCTGAAACAG  1211
             | | || || ||| || ||||||| |||||||||| |||||||||||||| ||||| || 
Sbjct  523   GGGGAGAGTAGTGTGGTCCGGCTAGAAACAATGGAAGAACAGTTGCAGAAGCTGAAGCAC  582

Query  1212  ATGTTCTTGGATCTTGAAACTCAGCTGCA-AATGGAAAAGGCAGA-GGC-TTCGGCCGCG  1268
             ||| |||||||||||||| ||||| |||| || |||||| | ||| ||  || ||| || 
Sbjct  583   ATGGTCTTGGATCTTGAATCTCAGATGCAGAA-GGAAAAAG-AGAAGGTGTT-GGCTGCA  639

Query  1269  AGAGCTCCTCTCTCCTTCAACGATGTTGTTTGCTGA  1304
             ||||||||||| || ||||| ||| || ||| ||||
Sbjct  640   AGAGCTCCTCTATCGTTCAAAGATATTTTTTACTGA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65160307410


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5