BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938834
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 470 1e-131
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 425 3e-118
AT3G58200.1 | Symbols: | TRAF-like family protein | chr3:21559... 193 4e-48
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 191 1e-47
> AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183
REVERSE LENGTH=1617
Length=1617
Score = 470 bits (254), Expect = 1e-131
Identities = 382/444 (86%), Gaps = 7/444 (2%)
Strand=Plus/Plus
Query 548 GGAAAGCATTGATGTCAATGGGTTTCAAGTTCATCCTTCACAGGTGGAATCCGTGAGATG 607
|||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 979 GGAAAG-GTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAATATGTGAGATC 1037
Query 608 TATTTTTGAAAAACACCCAGACATTGCAATAGATTTCCAAGTAAAGAACCAACATCTGAG 667
|| ||||||| |||||| ||||||||| |||| |||| || ||||||||||||||||||
Sbjct 1038 AATATTTGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAG 1097
Query 668 GAAAACATTCATGAATTTCCTGGTTAACGTAATCGAGACGCTGTGCCAACCTCTTCAGGA 727
|| | ||| ||||| ||| ||| ||| |||| ||||| |||||||| | ||| | ||
Sbjct 1098 GACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAGA 1157
Query 728 GCTCTCCAAA-GAAGATCTTTTGGAGGCAGACATTGCACTGACATACGTGAAAGATGCAG 786
||||| |||| ||||||||| |||| |||||||||||| ||||||| |||||||||||||
Sbjct 1158 GCTCT-CAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATATGTGAAAGATGCAG 1216
Query 787 GATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGAGGAAGTAAAAGAAAAGAAGGGGAAAG 846
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1217 GATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAG 1276
Query 847 AACTGTCCGGTTTGCTCCAGCTCCAAGAAATGGAGGATAATTTACTGAAACTGAAGGAAA 906
||||||| | | || | ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1277 AACTGTCTGATATGGTTCAGCTACAAGAAATGGAGGACCATTTACTGAAACTGAAGCAAA 1336
Query 907 AATGTTCAGACCTGGATGCTCTAGTGGAT-AAGAAGAAGG-CAGAGTTGTCGGTTACCAG 964
|||||||| || |||| |||||||| | |||||||||| | |||||||||||||||||
Sbjct 1337 GCTGTTCAGATCTTGATGATCTAGTGG-TGAAGAAGAAGGAC-GAGTTGTCGGTTACCAG 1394
Query 965 AAGTCCGCTCTCATTCGATGATGT 988
| |||||| ||||||||||||||
Sbjct 1395 ATCTCCGCTGTCATTCGATGATGT 1418
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 425 bits (230), Expect = 3e-118
Identities = 311/350 (89%), Gaps = 6/350 (2%)
Strand=Plus/Plus
Query 535 CTCAACAAGTGAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCATCCTTCACAGGTGG 594
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 539 CTCAACAAGTGAAGGAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 598
Query 595 AATCCGTGAGATGTATTTTTGAAAAACACCCAGACATTGCAATA-GATTTCCAAGTAAAG 653
|||| |||||| |||||||| ||||||| |||||||||||| || || ||||||||||||
Sbjct 599 AATCTGTGAGACGTATTTTTAAAAAACATCCAGACATTGCAGTAGGA-TTCCAAGTAAAG 657
Query 654 AACCAACATCTGAGGAAAACATTCATGAATTTCCTGGTTAACGTAATCGAGACGCTGTGC 713
||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||
Sbjct 658 AACCAACATCTGAGGAAAACATTCATGAATTTCCTTGTCAACGTAATTGAGACGATGTGC 717
Query 714 CAACCTCTTCAGGAGCTCTCCAAA-GAAGATCTTTTGGAGGCAGACATTGCACTGACATA 772
||| |||| ||||||||||| ||| ||||||||| |||| | ||||||||| |||||||
Sbjct 718 CAATCTCTCCAGGAGCTCTC-AAATGAAGATCTTGTGGAAGTAGACATTGCGTTGACATA 776
Query 773 CGTGAAAGATGCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGAGGAAGTAAAAGA 832
| |||||||||| |||||||||||||||||||| |||||||||||||| | || |||||
Sbjct 777 CTTGAAAGATGCGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCATGTGAAAGA 836
Query 833 AAAGAAGGGGAAAGAACTGTCCGGTTTGCTCC-AGCTCCAAGAAATGGAG 881
|||||||| |||||||| ||| |||||| || | ||||||| ||| |||
Sbjct 837 AAAGAAGGAGAAAGAACAGTCTGGTTTGATCATA-CTCCAAGGAATAGAG 885
> AT3G58200.1 | Symbols: | TRAF-like family protein | chr3:21559893-21561465
REVERSE LENGTH=1260
Length=1260
Score = 193 bits (104), Expect = 4e-48
Identities = 251/319 (79%), Gaps = 22/319 (7%)
Strand=Plus/Plus
Query 541 AAGTGAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCATCCTTCACAGGTGGAATCCG 600
||| ||| |||| |||||||||||||| |||||| |||| |||||| |||||||||| |
Sbjct 624 AAG-GAA-GAAATCATTGATGTCAATGTGTTTCATGTTCTTCCTTCCCAGGTGGAATTTG 681
Query 601 TGAGATGTATTTTTGAAAAACACCCAGACATTGCAAT-AGAT-TTCCAAGTAAAGAACCA 658
| || || ||||||||| | ||||||| ||||| || | || ||||||| |||||| ||
Sbjct 682 TAAGCCGTGTTTTTGAAAGATACCCAGAAATTGC-ATCA-ATATTCCAAGCAAAGAAGCA 739
Query 659 ACATCTGAGGAA-AACATTCATGAATTTCCTGGTTAACG--TAATCGAGACGCTGTGCCA 715
|||| ||| ||| | ||| |||| || |||| ||| | | || ||||| ||||| ||
Sbjct 740 ACATTTGA-GAACAGCATGCATGTATGTCCT-CCTAA-GTCTTATTGAGACACTGTG-CA 795
Query 716 A-CCTCTTCAGGAGCTCTCCAAAGAAGATCTT-TTGGAGGCAGACATTGCACTGAC-ATA 772
| | || | ||||||||||| || |||||| | ||||| ||||| ||| | || |||
Sbjct 796 AGTCACTGGAAGAGCTCTCCAATGATGATCTTGTGGGAGG-AGACAATGC-GTTACAATA 853
Query 773 CGTGAAAG-ATGCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGAGGAAGTAAAAG 831
| || ||| | | || |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 854 CCTG-AAGTTTTCTGGCTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGAGGAAGTTAAGG 912
Query 832 AAAAGAAGG-GGAAAGAAC 849
|||||||| |||| ||||
Sbjct 913 AAAAGAAGAAGGAA-GAAC 930
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 191 bits (103), Expect = 1e-47
Identities = 367/490 (75%), Gaps = 35/490 (7%)
Strand=Plus/Plus
Query 376 GGTTTCTCGTAAATGGAGAACTCGTGATTGTTGCAGATGTTCAA-GTTCTTGAAGTTGTT 434
||| ||| || || |||||| || |||||||| || | | || | |||||||||| ||
Sbjct 38 GGTATCTTGTGAACGGAGAAGTCAAGATTGTTGTGGA-GATAAATGATCTTGAAGTTATT 96
Query 435 GGC-ACTGTAGATGAATCGGCGGAAAGTGAAGAGGC-ATCTGAACCTGT-AAGCAAGATG 491
||| | | |||||| ||| | ||| ||||||| | | | ||||| | || |||||
Sbjct 97 GGCAAGT-TAGATGTATCAGAAGAATCTGAAGAGACAAAC-CAACCTCTGAA-AAAGATA 153
Query 492 AAGGTAGATG---ATGGTGCAAAGTCTATTGATT-TGCTCAGCCAGAC-TCAACAAGTGA 546
||| |||||| ||| |||| |||| |||||| | |||| | |||| || || ||| |
Sbjct 154 AAGCTAGATGATAATGATGCAGTGTCTTTTGATTCT-CTCAACGAGACTTC-ACCAGTAA 211
Query 547 AGGAAAGCATTGATGTCAATGGGTTTCAAGTTCATCCTTCACAGGTGGAATCCGTGA-GA 605
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
Sbjct 212 AGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAG- 270
Query 606 TGTATTTTTGAAAAACACCCAGACATTGCAAT-AGATTTCCAAGT--AAAGAACCAACAT 662
||||| ||||||| ||| |||||| ||||| | | | |||| || |||||| | ||
Sbjct 271 TGTATATTTGAAAGACATCCAGACTTTGCA-TCAAAATTCC--GTCCAAAGAATCGGCA- 326
Query 663 CT-GAGGAAAACATTCATGAATTTCCTGGTTA--ACGTAATCGAGACGCTGTGCCAACCT 719
|| || | ||||| ||||| | |||| | | || |||| ||||| ||||||| |
Sbjct 327 CTTGAAGTCAACATACATGACTGTCCTCCT-AGGAC-TAATTAAGACGTTGTGCCAGT-T 383
Query 720 -CTTCAGGAGCTCTCCAAAGAAGATCTTTTGGAGGCAGACATTGCACTGACATACGTG-A 777
| | |||||||| | | || ||||| || ||| | ||||| || |||||||| |
Sbjct 384 ACCTGAGGAGCTCACTGACGATGATCTGGACGAAGCATCCGTTGCAGTGTCATACGTGGA 443
Query 778 AAGATGCAGGATTTAAGGT-GGATTGGTTGGAGAAGAAGCTGGAGGAAGTAAAAGAAAAG 836
|| ||| || || ||| | ||||||||||||||||||||| | |||||| || | ||||
Sbjct 444 AA-ATGGTGGCTT-AAGATTGGATTGGTTGGAGAAGAAGCTTGCGGAAGTTAAGGCAAAG 501
Query 837 AAGGGGAAAG 846
||| |||||
Sbjct 502 AAGAAGAAAG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5