BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938835

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   217    9e-56


> AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr1:4348498-4350867 FORWARD LENGTH=1812
Length=1812

 Score =  217 bits (117),  Expect = 9e-56
 Identities = 149/165 (90%), Gaps = 0/165 (0%)
 Strand=Plus/Plus

Query  100  GGTGGGGAACGGAGATCTGTTAGGAGACAAGGTTTGATAGAATCGGCGAGGTTTCTGAGT  159
            |||||||||||||||||||| ||||||||||| |||| |||| | ||||||||||| |||
Sbjct  363  GGTGGGGAACGGAGATCTGTCAGGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGT  422

Query  160  TGTGCGAGTAGCGGACGTGTGATGAGGGAGCCATCTATGCTTGTGAGGGAGGCTGCGGCG  219
             |||| ||||||||||| |||||| | |||||||||||||||||||| || || ||||||
Sbjct  423  CGTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCG  482

Query  220  GAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT  264
            |||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  483  GAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5