BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938836
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 459 4e-128
> AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183
REVERSE LENGTH=1617
Length=1617
Score = 459 bits (248), Expect = 4e-128
Identities = 472/574 (82%), Gaps = 40/574 (7%)
Strand=Plus/Plus
Query 13 ATAGCGTCAATGGAGAAGCAAGCTCATAAGAAGTTTTATTGGATAATAAAGAACTTCTCT 72
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1 ATAGCGTCAATGGAGAAGCAAGCTCATAAAAAGTTTTGTTGGATAATAAAGAACTTCTCT 60
Query 73 CCGCAATCTGAGAGGTTATATTCTGTTCCAGTCTTGATCGGGGACTGCAAATGGCGTCTT 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CCGCAATCTGAGAGGTTATATTCTGTTCCAGTCTTGATCGGGGACTGCAAATGGCGTCCT 120
Query 133 ATTGCTTATCCCAAGGGAGACTTCTGTGATTACTTTTCTCTGTTTCTAGA-GCTTGTTGA 191
|| |||||||||| |||| | || | ||||||||||| |||| | | | |||||
Sbjct 121 ATCGCTTATCCCATTCGAGA-TAA-GT-A---CTTTTCTCTGTGTCTACAAG-TGGTTGA 173
Query 192 TTTTGAATCATTGCCTTGTGGATGGGGAAGATACGCAAAACTTCGGTTAACGTTA-GTGA 250
|||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||
Sbjct 174 TTTTGAATCATTACCTTGTGGATGGGGAAGATACGTAGAACTTCGGCTAACTTTACG-GA 232
Query 251 ATCGACTT--TT-TC-CAAATCTTTCCATAGTTAAAGAAACAGAGCACTGTTTTGATGAC 306
| | || | || || ||| |||||||||| |||| |||| ||||||||||| ||
Sbjct 233 ACCAACATAATTCTCTCAA-TCTTTCCATA---AAAG---CAGATCACTGTTTTGACGAA 285
Query 307 AAGTGTAGCACTTTTGGTTTTCCAACT--AT---GC-TTCCCATTTACAAACTTCAAGAG 360
||| ||| ||||| ||| |||||| | | | ||||||| | ||||||||| ||
Sbjct 286 AAGCGTACCACTTGGGGTATTCCAATTCCAGAAAGGATTCCCATATGCAAACTTCA-GAC 344
Query 361 -GAAG---ATCA-TG-GATT-TCTGGTGAACGGAGAAGTCAAAATTATTGCAGAGGTAGA 413
||| |||| | || | ||||||| ||||| |||| |||||||||||||| ||
Sbjct 345 TGAACTTTATCAGTCTGAACATGTGGTGAAAGGAGACTTCAAGATTATTGCAGAGGTTGA 404
Query 414 TGTTTCTGAATCTGCTGGGACATTAAATGAATCAGAGATTTCGG-AAGAATCATCTGATC 472
||||| |||| ||| ||||||||| | ||||||||| ||||||| || || ||||||| |
Sbjct 405 TGTTTTTGAAGCTGTTGGGACATTGACTGAATCAGATATTTCGGGAA-AAGCATCTGAAC 463
Query 473 TTCTGATCAAGAAAAA-AGGGAATGATGGCAATGAGTCTGATGATTTGCTCAAGAAAACT 531
|||||| ||| ||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 464 TTCTGACCAA-AAAAATACGGAATGATGGCAATGAGTCTGGTGATTTGCTCAAGAAAACT 522
Query 532 TTATCAGTAAAGGAAAGCAACAATAT-AATTAAT 564
| | ||| ||| ||||||||| || | ||| |||
Sbjct 523 TCACCAGAAAAAGAAAGCAACCATGTCAATGAAT 556
Score = 250 bits (135), Expect = 3e-65
Identities = 213/250 (85%), Gaps = 7/250 (3%)
Strand=Plus/Plus
Query 1102 ATATTCG-AAGTACACCCTGACATTGCAGTAGAATTCCGTGCAAAGAACCAACATCTGAG 1160
||||| | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1039 ATATTTGAAAG-ACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAG 1097
Query 1161 GACAACATTCATGAATTTCCTGCACAGCTTAATCGAGACGCTGTACCAGCCACTTG-AGT 1219
|||| ||| ||||| ||| |||| || ||||| ||||| |||| |||| |||||| ||
Sbjct 1098 GACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAG- 1156
Query 1220 GGCTTTCCAATGAAGATCTGGTGGAAGCAGACATTGCAGTGACATACT-TGGAAGATGTG 1278
||| || ||||||||||| |||||||||||||||||| ||||||| | || ||||||
Sbjct 1157 AGCTCTCAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGATGCA 1215
Query 1279 GGATTTAAGGTGGATTGGTTGGAGAAGAAACTGAACCAACTAAAGGaaaaaaaaaGAGAG 1338
||||||||||||||||||||||||||||| ||| ||||| |||| ||||| || ||||
Sbjct 1216 GGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAG-GAGAA 1274
Query 1339 AGAACAGTCT 1348
||||| ||||
Sbjct 1275 AGAACTGTCT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5