BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938840
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58470.1 | Symbols: | nucleic acid binding;methyltransferas... 1249 0.0
> AT3G58470.1 | Symbols: | nucleic acid binding;methyltransferases
| chr3:21626671-21628569 REVERSE LENGTH=1029
Length=1029
Score = 1249 bits (676), Expect = 0.0
Identities = 737/767 (96%), Gaps = 2/767 (0%)
Strand=Plus/Plus
Query 6 GACGCCGAAGCTCAAATGGAAAAAGAACATGAGCTCCAGAAGCTAAACAGTCAAGTTTCA 65
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 48 GACGCCGAAGCTTAAATGGAAAAAGAAGATGAGCTCCAGAAGTTAAACGGTCAAGTTTCA 107
Query 66 GCTCCACGAGACGGAGATGTAGAAGATGACGATCCACTAGTGTTGAGCTCTCAAGCTTTG 125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 108 GCTCCACGAGACGGAGATGTAGAAGATGACGATCCACTAGTGTTGAGTTCTCAAGCTTTG 167
Query 126 GCGGCGCTCCAGGAATTTCTAGCCGACCAGAACAAGACTGTTGCGAGCACGCCACCGGCG 185
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 168 GCGGCGCTTCGGGAATTTCTAGCAGACCAGAACAAGACTGTTGCGAGCACGCCACCGGCG 227
Query 186 TCTTCCGTCGCCGGAGAAGAGGCTTCCGATAAAGTGGAGCTGGTTACGGAGGATTGGAGA 245
|||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 228 TCTTCCGTCGCCGGAGGAGAAGAATCCGATAAAGTGGAGCTGGTTACGGAGGATTGGAGA 287
Query 246 CTCAGCCAGTTCTGGTACGAACCTGAAACCGCAGAGACTGTAGCAGAGGAAGTGGTCACT 305
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 288 CTCAGCCAGTTCTGGTACGAACCTGAAACTGCAGAGACTGTAGCAGATGAAGTGGTCACT 347
Query 306 CTCTCT-AGTAGATTTTCAGGCTGCAGAGTCGCTTGCATTGCTTGCCCTACTCTCTACGT 364
|||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTCTCTCA-AAGAATTCCAGGCTGCAGAGTCGCTTGCATTGCTTGCCCTACTCTCTACGT 406
Query 365 TTATCTCAAGAAAAGGGATCCGAGTCTTGAGGTGCAATTGCTTGAGTACGATATGAGATT 424
||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 407 TTATCTCAAGAAAAGAGATCCTAGTCTTCAGGTGCAATTGCTGGAGTACGATATGAGATT 466
Query 425 CGAGAGATATGGAAATGAGTTCACTTTCTATGATTACAACGAACCAGAAGATCTGCCGCT 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CGAGAGATATGGAAAAGAGTTCACTTTCTATGATTACAACGAACCAGAAGATCTGCCGCT 526
Query 485 TCAGCTGAAACATTGCTTCCATATAATCGTTGCAGATCCTCCCTACTTGAGTAGGGAATG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TCAGCTGAAACATTGCTTCCATATAATCGTTGCAGATCCTCCCTACTTGAGTAGGGAATG 586
Query 545 CCTGGAAAGAGTTAGTCAAACAATTTCATTCCTCGCAAGCCCAGTAGATTCACTGTTGCT 604
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 587 CCTGGAAAGAGTTAGTCAAACAATTTTGTTCCTCGCAAGCCCAGTAGATTCATTGTTGCT 646
Query 605 TCTTCTCACAGGAGAGGTGCAGAGAGAACATGCAGCTGAGCTATTGGGTGTTCGTCCTTG 664
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 647 TCTTCTCACAGGAGAGGTGCAAAGAGAACATGCAGCTGAGCTATTGGGTGTTCGCCCTTG 706
Query 665 TGTGTTTAAGCCTCATCACTCTAGCAAACTCGGAAACGAGTTCCGATTGTTTATAAGTTA 724
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 TGTGTTTAAGCCTCATCACTCTAGCAAACTCGGAAACGAGTTCCGACTGTTTATAAGTTA 766
Query 725 TGATCCAGGTACCAGATTAGGAGGCTTGGAAGAAGACAGCTAGTTGT 771
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGATCCAGGTACCAGATTAGGAGGCTTGGAAGAAGACAGCTAGTTGT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5