BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938849
Length=577
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58550.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 887 0.0
> AT3G58550.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr3:21649364-21650287
REVERSE LENGTH=730
Length=730
Score = 887 bits (480), Expect = 0.0
Identities = 543/574 (95%), Gaps = 1/574 (0%)
Strand=Plus/Plus
Query 1 TTCTTACTCTGCTGCATAAACTGATGGCTAGATTCATGGGTTACAGTCAAAATCGACAAA 60
||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 32 TTCTTACTCTGCTGCATTAACTGATGGCTAGATTCATGGCTTACAATCAAAATCCACAAA 91
Query 61 TGTTGGCTCTATGCATAACAGTAGCAGTAATGTTTCTTGGTGTGAGATCAGAATTGAGTC 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 92 TGTTGGCTCTATGCATAACAGTAGCAGTAATGTTCCTTGGTGTGAGATCAGAATTGAGTC 151
Query 121 AGGACATAAAGGGATGTCAGGAGGCCATGTCTGATCTCTACTCTTGTCTTCCTTTTGTCT 180
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 152 AGGATATAAAGGGATGTCAGGATGCGATGTCTGATCTCTACTCTTGTCTTCCTTTTGTCA 211
Query 181 CTAACAAAGCTAAAGCTCCAGACTCAACATGTTGCAGCACACTTAAGGCAAAAATAGACA 240
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 212 CTAACAAAGCTAAAGCACCAGACTCAACATGTTGCAGCACACTCAAGGTAAAAATAGACA 271
Query 241 AAGGGCAGACCAAGAAATGTCTCTGTACTCTTGTCAAAGACAGGGATGATCCTGGTTTGG 300
|||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 272 AAGGGCAGACCAGGAAATGTCTATGTACTCTAGTCAAAGACAGGGATGATCCTGGTTTGG 331
Query 301 GGTTCAAAGTTGATGGCAATCGTGCAATGAGCCTCCCTTCCGCTTGTCATGTCCCTGCAA 360
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GGTTCAAAGTTGATGCCAACCGTGCAATGAGCCTCCCTTCCGCTTGTCATGTCCCTGCAA 391
Query 361 ATATCTCTCAGTGCCCAGATCTTCTACATCTGCTTCCAGATTCACCAGCCTCTCAGATAT 420
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 392 ACATCTCTCAATGCCCAGATCTTCTACATCTGCTTCCAGATTCACCAGCCTCTCAAATAT 451
Query 421 TTAAGCAATTCAATGAATCTTCTTCTCAGAATGTTGGACATAAAGCGGTCTCCACAAGTT 480
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 452 TTAAGCAATTCACTGAATCTTCTTCTCAGACTGTTGGACATAAAGCGGTCTCCACAAGCT 511
Query 481 CAAGCAGCAAAGGAAGAGACAAGAGGCAATTTGGTTTAATGATGGCTGGTGCTCTCTCAG 540
|||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 512 CAAGCATCAAAGGAAGAGACAACAAGCAATTTGGTTTAATGATGGCTGGTGCTCTCTCAA 571
Query 541 TATGGTATTTAGTGTAAA-TCCTCTGTAATCTAA 573
|||||||| || |||||| |||||||| ||||||
Sbjct 572 TATGGTATATAATGTAAAATCCTCTGTGATCTAA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27729249144
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5