BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938850
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58560.1 | Symbols: | DNAse I-like superfamily protein | ch... 2998 0.0
> AT3G58560.1 | Symbols: | DNAse I-like superfamily protein |
chr3:21650596-21654200 REVERSE LENGTH=2397
Length=2397
Score = 2998 bits (1623), Expect = 0.0
Identities = 1752/1815 (97%), Gaps = 5/1815 (0%)
Strand=Plus/Plus
Query 2 ACTTAGTTACGG-AAAAGCAATGCTTAGCGTTATACGGGTGCATCTACCGTCCGAGATAC 60
|||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 285 ACTTAGTTACGGTAAAAGCAATGCTTAGCGTTATACGAGTGCATCTACCGTCGGAGATTC 344
Query 61 CTATTGTTGGCTGCGAACTTACACCTTACGTGCTTCTCCGGCGGCCTGATAAAACCCCCA 120
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 345 CTATTGTTGGCTGCGAACTTACACCTTACGTACTTCTCCGGCGGCCTGATAAGACCCCCT 404
Query 121 CCACCGATGATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CCACCGATGATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGGT 464
Query 181 ATCGAGTACAGAGTGATAAGACAGTTGCGATTTGTAGTGTGCATCCATCCGAGCCGGCCA 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 465 TTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCCGAGACGGCAA 524
Query 241 CATTGCAGTGTCTGGGATGTCTAAAGTCTAAGGTTCCTGTTGCTAAAAGCTACCATTGCT 300
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 525 CATTGCAGTGTCTGGGATGTCTAAAGTCTAAAGTTCCTGTTGCCAAAAGCTACCATTGCT 584
Query 301 CTACTAAGTGCTTTTCAGATGCCTGGCAACATCACCGTGTGTTGCATGACCGTGCTGCCA 360
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 585 CTACTAAGTGCTTTTCGGATGCGTGGCAACATCACCGTGTGTTGCATGAGCGTGCTGCCA 644
Query 361 GTGCTGCTACAGAAGGAAATGATGAAGAAGAGTTGCTCCGTTTGAATAGCTCAGGGTCTG 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 645 GTGCTGCTACAGAAGGAAATGATGAAGAAGAGTTGCCCCGTTTGAATAGCTCAGGGTCTG 704
Query 421 GATCTGGTGTTCTCAGCACCAGTGGTAGTTTAACGAATGGGTCATCATCAGTTTATCCTG 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 705 GATCTGGTGTTCTCAGCACCAGTGTTAGTTTAACGAATGGGTCATCATCAGTTTATCCTT 764
Query 481 CAGCCATAACTCAAAAGACAGGTGCTGGAGGAGAAACACTTGTTGAGGTTGGACGCTCTA 540
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 765 CAGCCATAACTCAAAAGACCGGCGCCGGAGGAGAAACACTTGTTGAGGTTGGACGCTCTA 824
Query 541 AGACATACACACCAATGGCTGACGATATCGGCCATGTTTTGAAGTTTGAATGTGTAGTAG 600
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 825 AGACATACACACCAATGGCTGATGATATTTGCCATGTTTTGAAGTTTGAATGTGTAGTAG 884
Query 601 TCAATGCAGAGACAAAACAGAATGTGGGCCTTTCTTGTACCATATTGACTTCCCGTGTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCAATGCAGAGACAAAACAGAATGTGGGCCTTTCTTGTACCATATTGACTTCCCGTGTTA 944
Query 661 TTCCAGCTCCATCACCTTCTCCCCGTAGGCTTATCCCTGTTAGTGGAGCTGATGTTATTG 720
| |||||||||||||||||||| |||||||| ||| || |||||||| ||||||||| ||
Sbjct 945 TCCCAGCTCCATCACCTTCTCCGCGTAGGCTGATCTCTATTAGTGGAACTGATGTTACTG 1004
Query 721 GGCACCTGGATTCTAATGGGCGACCTTTGTCTATGGGATCATTCACTGTGCTGTCCTACA 780
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1005 GGCACCTGGATTCTAATGGGCGGCCTTTGTCTATGGGAACATTCACTGTGCTGTCCTACA 1064
Query 781 ATATATTGTCTGATACATATGCTAGCAGCGACATATACAGTTACTGCCCCACATGGGCTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATATATTGTCTGATACATATGCTAGCAGCGACATATACAGTTACTGCCCCACATGGGCTC 1124
Query 841 TCGCTTGGACATACCGTAGACAGAATTTGTTACGGGAAATTGTCAAGTACGGTGCAGATA 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1125 TCGCTTGGACATACCGTAGACAGAATTTGTTACGGGAAATTGTCAAGTACCGTGCAGATA 1184
Query 901 TAGTTTGTCTACAAGAGGTACAGAATGATCATTTTGAGGAGtttttttCT-CCTGAGCTG 959
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1185 TAGTTTGTCTACAAGAGGTACAGAATGATCATTTTGAGGAGTTTTTT-CTTCCTGAGCTG 1243
Query 960 GATAAACACGGATACCAAGGTCTTTTTAAGAGGAAAACAAATGAGGTTTTCGTCGGTAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1244 GATAAACACGGATACCAAGGTCTTTTTAAGAGGAAAACAAATGAGGTTTTCATCGGTAAT 1303
Query 1020 ACAAACACAATTGATGGGTGCGCTACTTTCTTCAGAAGAGACAGGTTCTCACATGTCAAA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1304 ACAAACACAATTGATGGGTGCGCTACTTTCTTCAGAAGAGACAGGTTCTCACATGTAAAA 1363
Query 1080 AAATACGAGGTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTT 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 AAATATGAGGTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTT 1423
Query 1140 TCCCAGAAGAAAACTGCTTTAAATCGATTGGTTAAGGATAATGTTGCTTTAATAGTTGTA 1199
||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1424 TCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAGGATAATGTTGCTTTAATAGTTGTA 1483
Query 1200 CTGGAAGCAAAATTTGGTAGCCAGGCTGCTGACAATCCTGGGAAGCGCCAGCTACTTTGT 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTGGAAGCAAAATTCGGTAGCCAGGCTGCTGACAATCCTGGGAAGCGCCAGCTACTTTGT 1543
Query 1260 GTGGCTAACACGCATGTAAACGTTCCTCATGAACTGAAAGATGTAAAGCTGTGGCAGGTT 1319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1544 GTGGCTAACACGCATGTAAACGTTCCTCATGAATTGAAAGATGTAAAGCTGTGGCAGGTT 1603
Query 1320 CACACATTATTGAAGGGACTTGAGAAAATAGCTGCCAGTGCAGATATTCCAATGCTTGTG 1379
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1604 CACACATTATTGAAGGGACTGGAGAAAATAGCTGCCAGTGCAGATATTCCAATGCTTGTG 1663
Query 1380 TGTGGAGATTTCAACACAGTACCTGCAAGTGCTCCTCATACACTTCTTGCTATGGGAAAG 1439
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1664 TGTGGAGATTTCAACACAGTACCTGCGAGTGCTCCTCATACACTTCTTGCTGTGGGAAAG 1723
Query 1440 GTCGATCCGTTGCACCCAGATTTGATGGTTGATCCTCTTGGAATTTTGCGTCCTCACACC 1499
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1724 GTCGATCCATTGCACCCAGATTTGATGGTTGATCCTCTTGGAATTTTACGTCCTCACAGC 1783
Query 1500 AAGCTTACTCATCAGCTGCCACTGGTTAGTGCTTACTCATCA-TTTGCAAGAATGGGAGG 1558
|||||||||||||||||||||||||||||||| |||||| || ||||||| |||||||||
Sbjct 1784 AAGCTTACTCATCAGCTGCCACTGGTTAGTGCCTACTCA-CAATTTGCAAAAATGGGAGG 1842
Query 1559 CAGCGTTATTGCTGAGCAGCAACGTAGAAGAATGGATCCTGCATCAAATGAACCGTTGTT 1618
|| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1843 CAACGTTATTACTGAGCAGCAACGTAGAAGACTGGATCCTGCATCAAGTGAACCGTTGTT 1902
Query 1619 TACCAACTGTACCAGGGACTTTATAGGCACACTTGATTACATATTCTACACAGCGGACAC 1678
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1903 TACCAACTGTACCAGGGACTTTATAGGCACACTTGATTACATATTTTACACAGCGGACAC 1962
Query 1679 GCTAGCAGTGGAATCATTGTTGGAACTGTTGGATGAAGAGTCCTTGAGGAAGGACACAGC 1738
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 GCTAACAGTGGAATCGTTGTTGGAACTGTTGGATGAAGAGTCCTTGAGGAAGGACACAGC 2022
Query 1739 TCTTCCATCTCCAGAATGGTCTTCTGATCACATTGCACTTTTGGCTGAATTTCGCTGCAT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 TCTTCCATCTCCAGAATGGTCTTCTGATCACATTGCACTTTTGGCTGAATTTCGCTGCAT 2082
Query 1799 GCCCAGGGCCAGACG 1813
|||||||||||||||
Sbjct 2083 GCCCAGGGCCAGACG 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5