BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938852
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58580.1 | Symbols: | DNAse I-like superfamily protein | ch... 2983 0.0
> AT3G58580.1 | Symbols: | DNAse I-like superfamily protein |
chr3:21660598-21664095 REVERSE LENGTH=2478
Length=2478
Score = 2983 bits (1615), Expect = 0.0
Identities = 1774/1852 (96%), Gaps = 5/1852 (0%)
Strand=Plus/Plus
Query 1 CCAGGTGTTATTGAAAAGCAATGCTGAGCGTGATCCGAGTGCATCTTCCTTCTGAAATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CCAGGTGTTATTGAAAAGCAATGCTGAGCGTGATCCGAGTGCATCTTCCTTCTGAAATTC 438
Query 61 CCATTGTGGGCTGTGAATTGACTCCTTACGTTCTTGTTCGTCGCCCCGATAAGAACTCCG 120
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 439 CCATTGTGGGCTGTGAATTGACTCCTTACGTCCTTGTTCGTCGTCCCGATAAGAACTCCA 498
Query 121 CCACTGATGATGTCCCTGAATCGGCTCCCCTTGAAGGCTATTTCTTGAGATATAGATGGT 180
|||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct 499 CCACTGATGACGTCCCTGAATCTGCTCCTCTTGAAGGCTACTTCTTGAGATACAGATGGT 558
Query 181 ATCGTGTACAGAGCGATAAGAAAGTAACGATCTGCAGCGTGCATCCAACGGAACAAGCCA 240
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 559 ATCGTGTACAGAGTGATAAGAAAGTAACGATTTGCAGTGTGCATCCAACGGAACAAGCTA 618
Query 241 CTTTGCAATGTGTTTTCTGTTCTAAGCGTAGATCCCTTGTTCCAAAGAGCTATCACTGTA 300
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 619 CTTTACAGTGTGTTTTCTGTTCTAAGCGTAGATCCCTTGTTCCAAAAAGCTATCACTGTT 678
Query 301 CGCCTAAATGCTTTACGGATGCGTGGCAGCATCACAGGACTTTGCACGAGCGAGCAGCTG 360
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CGCCAAAATGCTTCACGGATGCGTGGCAGCATCACAGGACTTTGCACGAGCGAGCAGCTG 738
Query 361 CGGAAAACAACGCAAACGAGGATGATGACTTGGGCCGGAATAACAGTGTGGGTTCTGGGG 420
|||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 739 CGGAAAACAACGCAAACGAGGATGATGACTTGAACAGGAATAACAGTGCGGGTTCTGGGT 798
Query 421 CTCTCGCTGGTTCCTTATCTGGTTCTATGTCAAATCTTAATATTGCCAACAATGGTCCAG 480
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 799 CTCTCGCTGGTTCCTTATCTGGGTCTATGTCAAATCTTAGTATTGCCAACAATGGTCCAG 858
Query 481 CTCCGTTTTATCCTTCTAATATTACTCAGAAAAATGGAGGAGAGACGTTAGTCGAGGTTG 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 859 CTCCGTTTTATCCTTCTAATATTACTCAGAAAAATGGAGGAGAGACTTTAGTTGAGGTTG 918
Query 541 GGGCTTGCAAAACATACACTCCAATAGCTGATGATATTGGCCACGTTTTGAAGTTCGAGT 600
||| ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 919 GGGGTTGCAAAACGTACACTCCAACAGCTGATGATATTAGCCACGTTTTGAAGTTCGAGT 978
Query 601 GTGTTGTGGCTAATGCTGAGACTAAACAGATTATGGGACATCCTAGTACCATTTTGACTT 660
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 979 GTGTTGTGGCTAATGCTGAGACTAAACAGATTGTCGGACATCCTAGTACCATTTTGACTT 1038
Query 661 CACGGGTTATTCCTGCTCCTTCTCCAAGCCCCCGTAAGCTAGTCCCTGTTAACGGAGCTG 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1039 CACGGGTTATTCCTGCTCCTTCTCCAAGCCCCCGTAAGCTAATCCCTGTTAACGGAGCTG 1098
Query 721 ATGTGATGGGTCAGTTAGATCAAGATGGTCGGATTCAATCTGCAGGATCATTCACTGTTC 780
||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1099 ATGGGATGGGTCACTTAGATCAAGATGCTCGGATTCAGTCTGCAGGATCATTCACTGTTC 1158
Query 781 TTTCATATAACATTTTGTCTGATACTTCTGCAAGTAGCGACCTCTACAGTTACTGTCCTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TTTCATATAACATTTTGTCTGATACTTCTGCAAGTAGCGACCTCTACAGTTACTGTCCTC 1218
Query 841 CTTGGGCTCTTTCTTGGCCATACCGCAGACAGAATTTGTTAAGGGAGATTGTTGGATATA 900
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1219 CTTGGGCTCTTTCATGGCCATACCGAAGACAGAATTTGTTAAGGGAGATTGTTGGATATA 1278
Query 901 GAGCCGATGTAGTTTGCCTGCAAGAAGTACAAAGTGATCATTTCCATGAAATTTTTGCTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GAGCCGATGTAGTTTGCCTGCAAGAAGTACAAAGTGATCATTTCCATGAAATTTTTGCTC 1338
Query 961 CTGAGTTGGAGAAGCATGGGTATCAAGCTCTCTACAAGAGGAAGACTAATGAGGTTCTCA 1020
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1339 CTGAGTTGGATAAGCATGGGTATCAAGCTCTTTACAAGAGGAAGACTAATGAGGTTCTCA 1398
Query 1021 GCGGAAGTACAAGTGCCATTGACGGCTGTGCAACATTTTTCCGACGGGATAGATTTTCGC 1080
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1399 GCGGAAGTACAAGTGCCATTGACGGCTGTGCAACATTTTTCCGGCGGGATAGGTTTTCGC 1458
Query 1081 ATGTCAAGAAATATGATGTTGAATTCAATAAGGCTGCTCAGTCTTTGACTGATGCTCTAA 1140
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1459 ATGTCAAGAAATATGATGTTGAATTCAACAAGGCTGCTCAGTCTTTGACTGACGCTCTAA 1518
Query 1141 TCCCTCAGACGCAGAAGAGAGCTGCTTTAAATCGACTGGTCAAGGATAACATTGCGTTGA 1200
|||||||| | ||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1519 TCCCTCAGGCTCAGAAGAGAACTGCTTTAAACCGACTGGTTAAGGATAACATTGCGTTGA 1578
Query 1201 TAGTTGTTCTTGAAGCCAAGTTTGGTAATCAACCTACTGATCCTTCTGGGAAGCGCCAGC 1260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TAGTTGTTCTTGAAGCCAAATTTGGTAATCAACCTACTGATCCTTCTGGGAAGCGCCAGC 1638
Query 1261 TTATTTGTGTGGCAAACACACATGTAAATGTTCAACAAGATCTGAAGGATGTGAAGCTCT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TTATTTGTGTGGCAAACACACATGTAAATGTTCAACAAGATCTGAAGGATGTGAAGCTCT 1698
Query 1321 GGCAGGTTCATACCTTATTAAAGGGACTGGAAAAAATAGCTGCTAGTGCCGATATTCCTA 1380
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1699 GGCAGGTTCATACCTTATTAAAGGGACTAGAGAAAATAGCAGCTAGTGCCGATATTCCTA 1758
Query 1381 TGCTTGTGTGTGGAGACTTTAATACTATTCCTGGGAGTGCTCCTCATACACTTCTTGTAA 1440
||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1759 TGCTTGTGTGTGGAGACTTCAATACGCTTCCTGGGAGTGCACCTCATACACTTCTTGTAA 1818
Query 1441 TGGGAAAGGTTGATCC-AGGTCACCCAGATCTGGCAGTCGATCCCCTAAATATACTGCGT 1499
|||||||||||||||| | | |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1819 TGGGAAAGGTTGATCCAATG-CACCCAGATCTGGCAGTCGATCCCCTTAATATCCTGCGT 1877
Query 1500 CCTCACACCAAATTGACTCATCAATTGCCTTTGGTGAGCGCGTACTCATCGTTTGTGAGA 1559
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1878 CCTCACACCAAATTGACTCATCAATTGCCTCTGGTGAGCGCGTACTCATCGTTTGTGAGA 1937
Query 1560 AATGG---AATGGGTGTTGGATTGGAACAACACAGAAGGAGAATAGATCTTAATACAAAC 1616
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 AAGGGAATAATGGGTCTTGGATTGGAACAACACAGAAGGAGAATAGATCTTAATACAAAC 1997
Query 1617 GAGCCTTTGTTTACCAATTGTACAAGGGACTTTATCGGCACTCATGACTACATATTCTAC 1676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1998 GAGCCTTTGTTTACCAATTGTACAAGGGACTTCATCGGCACTCATGACTACATATTCTAC 2057
Query 1677 ACAGCGGATACATTAATGGTGGAATCTCTATTGGAATTACTGGATGAAGATGGATTAAGA 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 ACAGCGGATACATTAATGGTGGAATCTCTATTGGAATTACTGGATGAAGATGGATTAAGA 2117
Query 1737 AAAGACACAGCTCTTCCTTCCCCAGAATGGTCTTCTAATCACATTGCACTTTTAGCTGAA 1796
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2118 AAAGACACAGCTCTTCCTTCCCCAGAATGGTCTTCTAATCACATTGCTCTCTTAGCTGAA 2177
Query 1797 TTTCGATGCATGCCTAGGACCAGACGCTGCTAACCACCTTCACCACCCACCA 1848
|||||||||| ||||||||| |||||| | ||||| ||||||||||||||||
Sbjct 2178 TTTCGATGCACGCCTAGGACAAGACGCGGTTAACCGCCTTCACCACCCACCA 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5