BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938862
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging f... 881 0.0
> AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging
factor 1B | chr3:21707276-21708911 FORWARD LENGTH=806
Length=806
Score = 881 bits (477), Expect = 0.0
Identities = 546/579 (94%), Gaps = 5/579 (1%)
Strand=Plus/Plus
Query 1 TAGAAAGCGA-TTGAATAAAGAAAAATCTA-AAGAGAAGCCATGGCAGGATTTGGACCGA 58
|||||| | | ||||| |||| |||||| | ||||||||||||||| ||| |||||||||
Sbjct 54 TAGAAAAC-AGTTGAAGAAAG-AAAATC-ACAAGAGAAGCCATGGCCGGAATTGGACCGA 110
Query 59 TTACTCAGGATTGGGAACCAGTTGTGATCCGTAAGAAAGCTCCTAACTCTGCCGCTAAGC 118
||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||
Sbjct 111 TTACTCAGGATTGGGAACCAGTTGTGATCCGCAAGAGAGCTCCTAACGCTGCAGCTAAGC 170
Query 119 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGCA 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 171 GCGACGAGAAGACTGTCAACGCCGCTCGTCGAAGCGGCGCCGATATTGAGACCGTTCGAA 230
Query 179 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AATTCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGC 290
Query 239 TAGATGATGACACTGAGAACTTATCTCATGATCGTGTACCCACTGAGTTGAAGAAAGCCA 298
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 291 TAGATGATGATACTGAGAACTTATCTCATGATCGTGTGCCCACTGAATTGAAGAAAGCCA 350
Query 299 TCATGCAAGCCAGAGGGGAGAAGAAGCTGACTCAGTCGCAGCTTGCCCAACTGATCAATG 358
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 351 TCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCATCTGATCAATG 410
Query 359 AGAAGCCACAAGTGATCCAAGAATACGAGTCAGGTAAAGCAATTCCGAATCAACAGATCC 418
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 411 AGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCC 470
Query 419 TCTCTAAGCTGGAGAGGGCACTTGGTGCTAAACTACGTGGAAAGAAGTAGAAGTGTAGAA 478
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 471 TTTCAAAGCTGGAGAGGGCACTTGGTGCTAAACTCCGTGGAAAGAAGTAGAAGTGTAGAA 530
Query 479 CAAAGCTCTTGAAGGTAAAAACAAAAGCTAATCTCAGTTTCTCTTCAGTCCAGATGCTTT 538
|||||||||| ||||||| |||||||||| ||| |||||||||| ||||||| |||||||
Sbjct 531 CAAAGCTCTTAAAGGTAACAACAAAAGCTGATCGCAGTTTCTCTCCAGTCCACATGCTTT 590
Query 539 ACCATATCCTAGAAACTATATCTATGTATGGTTTGGTTT 577
||||||||||| |||||||||||||||||||||||||||
Sbjct 591 ACCATATCCTAAAAACTATATCTATGTATGGTTTGGTTT 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5