BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938863
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19650.1 | Symbols: | cyclin-related | chr3:6823508-6825261... 492 2e-138
AT4G21940.2 | Symbols: CPK15 | calcium-dependent protein kinase... 224 9e-58
AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase... 159 2e-38
> AT3G19650.1 | Symbols: | cyclin-related | chr3:6823508-6825261
FORWARD LENGTH=1031
Length=1031
Score = 492 bits (266), Expect = 2e-138
Identities = 315/339 (93%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 371 AAAAGACACAAATCTAAACTATGGCAGACAGAACGACAGAAACTGGAGGAGCAATATGCA 430
||||||||| ||||||||| || ||||||||||||| || |||||||||||||||| |||
Sbjct 626 AAAAGACACTAATCTAAACAATCGCAGACAGAACGAGAGGAACTGGAGGAGCAATACGCA 685
Query 431 TTCAGAAAGACATGAGAGACCAGCAATGGGAAGAGACAGAGTGTGGAACAGAGATGATGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTCAGAAAGACATGAGAGACCAGCAATGGGAAGAGACAGAGTGTGGAACAGAGATGATGA 745
Query 491 AAGAGGCGCGGGAAGCAGACAGAGTTATCGAGTTGATAGAGACAGATTCCACGGCAATGG 550
||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 746 AAGAGGCGCGGGAAGCAGACAGAGTTATCAAGCTGATAGAGACAGATTCAACGGCAATGG 805
Query 551 GCGAAGTGGGTTTAGGGGAAGCTGTACAAGGAATGAGAAGAAATGGGACCATGACTTGTT 610
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 806 GCGAAGTGGGTTTAGCGGAAGCTGGACAAGGAATGAGAAGAAATGGGACCATGACTTGTT 865
Query 611 CGAGGAGGCGAACAAGAGTCCAGCCAAAGACACTGAGGAAGAACAGGTTGC-AAATGTTG 669
||| |||||||||||||||||||| |||| ||| |||||||||||| | || ||| ||||
Sbjct 866 CGATGAGGCGAACAAGAGTCCAGCTAAAGCCACCGAGGAAGAACAGATAGCTAAA-GTTG 924
Query 670 AATTTTTGTTGGCTTCTTAAAGCTGCATATGTTATGGTT 708
|| |||||||||||||| ||||||| ||||| ||||||
Sbjct 925 AAGCTTTGTTGGCTTCTTGAAGCTGCTTATGTCATGGTT 963
Score = 148 bits (80), Expect = 5e-35
Identities = 107/119 (90%), Gaps = 5/119 (4%)
Strand=Plus/Plus
Query 178 TTAGAGATGGTACTGATGCAGAGAAGAAAC-CACGTCAGTCCTTGAGAGATGCTGCGCCG 236
|||||||||||||||| | ||||| |||| |||||||||| |||||||||||| ||
Sbjct 175 TTAGAGATGGTACTGACACTGAGAA-AAACTCACGTCAGTCTTTGAGAGATGCT---CCA 230
Query 237 TTGGAACCTGATGCTCATGGTTCGAGAAAAGACAGTGAAAAGAAGCACTCTGGACATCA 295
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 231 TTGGAACTTGATGCTCATGGTTCGAGAAAAGACAGTGAGAAGAAGCACTCTGGACATCA 289
> AT4G21940.2 | Symbols: CPK15 | calcium-dependent protein kinase
15 | chr4:11640802-11643762 FORWARD LENGTH=2006
Length=2006
Score = 224 bits (121), Expect = 9e-58
Identities = 134/140 (96%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 38 TTTGGATGTTGTTCAGATTTGTCATTTCATGGGAGTGATTCATCGTGATCTTAAGCCTGA 97
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 675 TTTGAATGTTGTTCAGATTTGTCATTTCATGGGAGTGATTCATCGTGATCTCAAGCCTGA 734
Query 98 GAATTT-CTTGCTCGCTAGCACTGATGAGAATGCTATGCTTAAAGCTACTGATTTTGGAT 156
|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GAATTTTCT-GCTCGCTAGTACTGATGAGAATGCTATGCTTAAAGCTACTGATTTTGGAT 793
Query 157 TGTCTGTCTTCATTGAAGAA 176
||||||| ||||||||||||
Sbjct 794 TGTCTGTGTTCATTGAAGAA 813
> AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase
21 | chr4:2394458-2397759 REVERSE LENGTH=2083
Length=2083
Score = 159 bits (86), Expect = 2e-38
Identities = 118/134 (88%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 43 ATGTTGTTCAGATTTGTCATTTCATGGGAGTGATTCATCGTGATCTTAAGCCTGAGAATT 102
|||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||||
Sbjct 697 ATGTTGTTCAGATTTGTCATTTTATGGGTGTGGTTCATCGAGATCTCAAGCCTGAGAATT 756
Query 103 TCTTGCTCGCTAGCACTGATGAGAATGCTATGCTTAAAGCTACTGATTTTGGATTGTCTG 162
||||||| | || | || ||||||||||||||||||||||||||||| || ||||| |
Sbjct 757 TCTTGCTTTCGAGTAAAGAGGAGAATGCTATGCTTAAAGCTACTGATTTCGGTTTGTCCG 816
Query 163 TCTTCATTGAAGAA 176
||||||| ||||||
Sbjct 817 TCTTCATCGAAGAA 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5