BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938868
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58730.1 | Symbols: | vacuolar ATP synthase subunit D (VATD... 1365 0.0
> AT3G58730.1 | Symbols: | vacuolar ATP synthase subunit D (VATD)
/ V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)
| chr3:21718257-21719980 REVERSE LENGTH=1210
Length=1210
Score = 1365 bits (739), Expect = 0.0
Identities = 791/817 (97%), Gaps = 0/817 (0%)
Strand=Plus/Plus
Query 10 AGTTTTGAAAGATGGCTGGCCAAAACGCTCGTTTGAATGTGGTTCCCACTGTTACTATGC 69
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 AGTTTTGAAATATGGCTGGCCAAAACGCGCGTTTGAATGTGGTTCCCACTGTTACTATGC 235
Query 70 TCGGGGTTATGAAAGCCCGTCTTGTTGGAGCTACAAGAGGTCATGCTCTTCTCAAGAAGA 129
|||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 236 TCGGGGTTATGAAAGCTCGTCTTGTTGGCGCTACAAGAGGTCATGCTCTCCTCAAGAAAA 295
Query 130 AGAGTGATGCTTTAACTGTTCAGTTTAGGGCACTTCTCAAGAAAATCGTTACAGCAAAGG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 AGAGTGATGCTTTAACTGTTCAGTTTAGGGCACTTCTCAAGAAAATCGTTACAGCTAAGG 355
Query 190 AGTCCATGGGAGATATGATGAAGACATCGTCGTTTGCTCTTACTGAAGTAAAGTATGTTG 249
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 356 AGTCTATGGGAGATATGATGAAGACATCGTCTTTTGCTCTTACCGAAGTAAAGTATGTTG 415
Query 250 CTGGTGAGAATGTCAAGCATGTTGTCCTCGAGAACGTTAAAGAAGCTACATTGAAGGTTC 309
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 CTGGTGACAATGTCAAACATGTTGTCCTCGAGAACGTTAAAGAAGCTACTTTGAAGGTTC 475
Query 310 GTTCTCGGACGGAGAATATTGCTGGAGTGAAGCTGCCTAAGTTTGATCACTTCTCTGAAG 369
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GTTCTCGGACAGAGAATATCGCTGGAGTGAAGCTGCCTAAGTTTGATCACTTCTCTGAAG 535
Query 370 GCGAGACCAAGAATGACTTGACCGGTTTAGCTAGAGGTGGTCAACAGGTCCAAGCTTGCC 429
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 536 GTGAGACCAAGAATGACTTGACCGGTTTAGCTAGAGGTGGTCAACAGGTCCGAGCTTGCC 595
Query 430 GTGTTGCTTATGTGAAAGCCATTGAAGTTCTAGTTGAGCTTGCTTCTCTTCAGACTTCTT 489
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 GTGTTGCTTATGTGAAAGCCATTGAAGTTCTAGTTGAGCTTGCTTCTCTCCAGACTTCTT 655
Query 490 TCTTGACGCTTGATGAAGCAATCAAGACGACTAACCGCAGGGTCAACGCTCTGGAGAATG 549
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 TCTTGACCCTTGATGAAGCAATCAAGACGACTAACCGTAGGGTCAACGCTCTGGAGAATG 715
Query 550 TGGTGAAACCAAAGCTGGAGAATACGATCAGTTACATCAAGGGAGAGCTTGATGAGCTTG 609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TGGTGAAACCAAAGCTGGAGAATACAATCAGTTACATCAAGGGAGAGCTTGATGAGCTTG 775
Query 610 AGAGAGAGGATTTCTTCAGGTTGAAGAAGATTCAGGGATACAAGAGGAGGGAAGTCGAAC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGAGAGAGGATTTCTTCAGGTTGAAGAAGATTCAGGGATACAAGAGGAGGGAAGTCGAAC 835
Query 670 GACAGGCAGCTCATGCTAAGGAGTTTGCTGAGGAAATGGTTCTTGAAGGCATCTCTATGC 729
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 GACAGGCAGCTAATGCTAAGGAGTTTGCTGAGGAAATGGTTCTTGAAGACATCTCTATGC 895
Query 730 AGAGAGGGATTTCGATAAACGCTGCTCGTAATTTCCTTGTTGGTGGTGCAGAGAAGGATT 789
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 896 AGAGAGGGATTTCGATAAACGCTGCTCGTAACTTCCTTGTTGGTGGTGCTGAGAAGGATT 955
Query 790 CAGACATCATTTTCTGAGGTGTGGGctctctctctct 826
||||||| |||||||||||||||||||||||||||||
Sbjct 956 CAGACATTATTTTCTGAGGTGTGGGCTCTCTCTCTCT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5