BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938873

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42850.1 | Symbols:  | Thioredoxin superfamily protein | chr...   198    3e-50


> AT5G42850.1 | Symbols:  | Thioredoxin superfamily protein | chr5:17181707-17182623 
REVERSE LENGTH=753
Length=753

 Score =  198 bits (107),  Expect = 3e-50
 Identities = 164/190 (86%), Gaps = 9/190 (5%)
 Strand=Plus/Plus

Query  255  GCCGGTGACAGACCGGCGTGGAGAACTCCGACGCATTCGTGGAGAGTTGATTCTCGGTTT  314
            ||||| ||||||||| ||||| | |||||| ||||| | |||||||||||||||||||||
Sbjct  281  GCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGATTCTCGGTTT  340

Query  315  AAGCTCATCGGAGTGCCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAGGGACGGCTT  374
            || || | |||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  341  AAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAAGGACGTCTT  400

Query  375  GAGGATCATCAAGCTCACCT---------GATTCTGCCCCTTCTTGCGCCATCCACTTGA  425
            || |||||||||||||||||         |||||| ||||||||||| ||||||||||||
Sbjct  401  GAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACCATCCACTTGA  460

Query  426  TTCGATCGAT  435
            || |||||||
Sbjct  461  TTTGATCGAT  470


 Score =  124 bits (67),  Expect = 6e-28
 Identities = 69/70 (99%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  186  CGTAGCAAGATCAGTTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC  245
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  CGTAGCAAGATCAATTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC  193

Query  246  TGGTGTCCAG  255
            ||||||||||
Sbjct  194  TGGTGTCCAG  203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5