BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938876
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58790.1 | Symbols: GAUT15 | galacturonosyltransferase 15 | ... 2662 0.0
AT3G58795.1 | Symbols: | other RNA | chr3:21745707-21746545 FO... 324 2e-87
AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 147 5e-34
> AT3G58790.1 | Symbols: GAUT15 | galacturonosyltransferase 15
| chr3:21742071-21746324 REVERSE LENGTH=2359
Length=2359
Score = 2662 bits (1441), Expect = 0.0
Identities = 1590/1663 (96%), Gaps = 6/1663 (0%)
Strand=Plus/Plus
Query 1 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCGGCGACGGGGATTAAGAAGGTTA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 333 GTTAGGGAAACTGTGAAGAAATGAAGTTTTACATATCAGCGACGGGGATTAAGAAGGTTA 392
Query 61 CCATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGG 120
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 393 CGATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGG 452
Query 121 CGGCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCG 180
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 453 CGGCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCG 512
Query 181 CCATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCG 240
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 513 CTATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCG 572
Query 241 TTTGCGATTCACCACTCGATTGCATGGGACTGAGACTTTTCCGTGGGGGCGACACATCTC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 573 TTTGCGATTCACCACTCGATTGCATGGGACTCAGACTTTTCCGTGGGGGCGACACATCTC 632
Query 301 TGAAAATTCGGGAAGAGTTGACACGAGCTCTAGTGG-A-AGA-GACAG---ATCAGGACT 354
|||||||| |||||||||||||||| |||||||||| | ||| ||||| ||||||||
Sbjct 633 TGAAAATTGGGGAAGAGTTGACACGGGCTCTAGTGGAAGAGACGACAGATCATCAGGACG 692
Query 355 TTAATGGAAGAGGaaaaaaaGGATCATTGGAGTCATTCGACGACCTTGTCAAGGAGATGA 414
||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 693 TTAATGGAAGAGGAACGAAGGGATCATTGGAGTCATTCGACGACCTTGTTAAGGAGATGA 752
Query 415 CGTTAAAACGCCGTGATATAAGGGCGTTTGCTTCCGTAACTAAGAAGATGCTGTTGCAGA 474
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 753 CGTTAAAACGCCGTGACATAAGGGCGTTTGCTTCCGTGACTAAGAAGATGCTGTTGCAGA 812
Query 475 TGGAGCGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGGAACGTAAAGTCCAATCAGCGAAACATCATGAGTTAGTGTACTGGCATTTAGCCTCTC 872
Query 535 ACGGTATTCCCAAAAGCCTTCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCGGTAA 594
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 873 ACGGTATTCCTAAAAGCCTCCATTGCCTTTCCCTCAGATTAACTGAAGAGTACTCTGTAA 932
Query 595 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAATCCGTCTCTCGTTTGACCGACCCAT 654
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||
Sbjct 933 ATGCAATGGCTCGAATGCGTTTGCCTCCGCCTGAGTCCGTATCACGTCTGACCGACCCAT 992
Query 655 CTTTTCACCATATTGTCATCTTGACCGACAATGTCCTGGCTGCCTCTGTCGTCATATCTT 714
||||||| ||||||||| || |||| ||||||||||| |||||||||||||||||||| |
Sbjct 993 CTTTTCATCATATTGTCCTCCTGACTGACAATGTCCTTGCTGCCTCTGTCGTCATATCGT 1052
Query 715 CTACTGTACAGAACGCTGTGAATCCCGAGAAGTTCGTCTTTCATATTGTTACCGATaaaa 774
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1053 CTACTGTACAAAACGCTGTGAATCCCGAGAAGTTTGTCTTTCATATTGTTACCGATAAGA 1112
Query 775 aaaCCTATACCCCTATGCACGCTTGGTTTGCTATCAACTCTGCTTTATCGCCAGTTGTCG 834
||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1113 AAACCTATACCCCTATGCATGCTTGGTTTGCTATCAACTCTGCTTCATCACCAGTTGTTG 1172
Query 835 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCGAGAAGTGAATTTCAAAGTTAGAGAGA 894
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1173 AAGTAAAGGGACTTCATCAGTATGATTGGCCTCAAGAAGTGAACTTCAAAGTTAGAGAGA 1232
Query 895 TGCTGGACATTCACCGCTTGATTTGGAGACGGCATTATCAAAATTTGAAAGACTCTGATT 954
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1233 TGCTGGACATTCACCGCTTAATTTGGAGACGACATTATCAAAATTTGAAAGACTCTGATT 1292
Query 955 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTCG 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1293 TTAGTTTTGTTGAGGGTACTCATGAGCAGTCCTTGCAAGCTCTAAATCCTAGCTGCCTTG 1352
Query 1015 CCCTTTTGAATCATCTTCGCATCTACGTTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1074
|||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1353 CCCTTTTGAACCATCTTCGCATTTACATTCCCAAGCTTTTTCCAGATCTCAACAAGATAG 1412
Query 1075 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCATCTTTATGGGAAACGGATC 1134
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1413 TGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATC 1472
Query 1135 TCAATGGTAAAGTTGCTGGTGCTGTCGTTGATTCGTGGTGCGGAAACAACTGTTGCCCGG 1194
|||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1473 TCAACGGTAAAGTTGTTGGTGCTGTCGTTGATTCGTGGTGCGGAGACAACTGTTGCCCCG 1532
Query 1195 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTCTGATCTCATCAAACTTAGTTC 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1533 GAAGAAAATACAAAGACTATTTCAACTTCTCACATCCTTTGATCTCATCAAACTTAGTTC 1592
Query 1255 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 AAGAAGACTGTGCTTGGCTTTCTGGTATGAATGTCTTTGATCTCAAAGCCTGGAGACAAA 1652
Query 1315 CCAATATCACAGAAGCTTACTCTACATGGTTAAGACTCAGTGTTAGTTCAGGACTACAAT 1374
||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1653 CCAATATTACTGAAGCTTACTCTACATGGCTAAGACTCAGTGTTAGGTCAGGACTACAAT 1712
Query 1375 TATGGCAACCAGGAGCTTTACCACCGACATTACTTGCTTTCAAAGGACTCATACAGTATC 1434
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1713 TATGGCAACCAGGGGCTTTACCACCGACATTACTTGCTTTCAAAGGACTTACACAGTCTC 1772
Query 1435 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCATAAAATGCCCTCAAGAGA 1494
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1773 TTGAACCATCATGGCACGTCGCTGGACTAGGTTCTCGATCCGTAAAATCCCCTCAAGAGA 1832
Query 1495 TTCTGAAATCTGCTGCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 TTCTGAAATCTGCTTCGGTTTTACATTTCAGCGGTCCAGCAAAACCGTGGCTAGAGATCA 1892
Query 1555 GTAACCCTGAGGTACGATCTATTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1893 GTAACCCTGAGGTACGATCTCTTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTA 1952
Query 1615 GAAAATGCAAAATCATGAACTGAGATTAAAAAACAGATTAGAA 1657
||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1953 GAAAATGCAAAATCATGAACTGAGACTAAAAAACAGATTAGAA 1995
> AT3G58795.1 | Symbols: | other RNA | chr3:21745707-21746545
FORWARD LENGTH=715
Length=715
Score = 324 bits (175), Expect = 2e-87
Identities = 189/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 63 ATATCAAATCCCGGCGTCGGAATCGGAAAAGGAAGCGGAGGATGCGCGGCTGCAGCGGCG 122
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 224 ATATCAAATCCCGGCGTCGGAATCGGTAAAGGAAGCGGAGGATGTGCGGCTGCAGCGGCG 165
Query 123 GCGTTAGCAGCGCGGAGATTCTCTGGTCGGACGTTGTTACTGTTGCTGCTGCTGCTCGCC 182
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 164 GCGTTAGCAGCGCGGAGATTCTCTAGTCGCACGTTGTTACTGTTGCTGCTGCTGCTCGCT 105
Query 183 ATCGTCCTCCCTTTTATCTTCGTCAGATTCGCGTTTCTCGTCCTCGAATCCGCCTCCGTT 242
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 104 ATCGTCCTCCCTTTTATCTTCGTCAGGTTCGCGTTTCTCGTCCTCGAATCTGCCTCCGTT 45
Query 243 TGCGATTCACCACTCG 258
||||||||||||||||
Sbjct 44 TGCGATTCACCACTCG 29
> AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription
factor family protein | chr3:21738460-21742517 FORWARD
LENGTH=1894
Length=1894
Score = 147 bits (79), Expect = 5e-34
Identities = 81/82 (99%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 1576 TTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTAGAAAATGCAAAATCATGAACT 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TTTGGTATAGATACGTAAATTCCTCCGACATCTTCGTTAGAAAATGCAAAATCATGAACT 1834
Query 1636 GAGATTAAAAAACAGATTAGAA 1657
|||| |||||||||||||||||
Sbjct 1833 GAGACTAAAAAACAGATTAGAA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5