BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938886
Length=232
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidy... 213 6e-55
> AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidylinositol
transfer family protein | chr4:18243774-18248805
REVERSE LENGTH=2321
Length=2321
Score = 213 bits (115), Expect = 6e-55
Identities = 191/225 (85%), Gaps = 16/225 (7%)
Strand=Plus/Plus
Query 9 GACTGATCACTGATGTGCTTTCGATCTCTCGTGAAAAC-ATCTTCAATCAATCGAGTTCA 67
|||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||
Sbjct 97 GACTGATCACTGATGTGCTTTCCTTCTCTCGTGACAACAATCTTCAATCAATCGAGTTCA 156
Query 68 GTTTTTAGTTCGTGTCTCCCTAATTTCACACGATCTAAGATCTCGTCACCAAAACGCTTT 127
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 157 CTTTTTAGTTCGTGACTCCCTAATTTCACACGATCAAAGATCTCGCCACCGAAACGCTTT 216
Query 128 CACCGAAGGAGATGGTTTC-ACGACGGAGAAGG--ATG------CGA--G-GAA-GACGG 174
|||| || | ||| |||| ||| ||| ||||| ||| ||| | ||| ||||
Sbjct 217 CACCCAA-G-GATTCTTTCAACGGCGGCGAAGGATATGATTACACGACGGAGAAGGACGA 274
Query 175 TGGCGAAGAGAGGGATAGTGAAATTGACGACCAATTAGCAGGTTC 219
|||| |||||||||||||||||||||||||||| || |||| |||
Sbjct 275 TGGCCAAGAGAGGGATAGTGAAATTGACGACCAGTTGGCAGATTC 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10455691792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5