BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938899
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58970.1 | Symbols: MGT6, MRS2-4 | magnesium transporter 6 |... 2161 0.0
> AT3G58970.1 | Symbols: MGT6, MRS2-4 | magnesium transporter 6
| chr3:21789332-21791359 REVERSE LENGTH=1834
Length=1834
Score = 2161 bits (1170), Expect = 0.0
Identities = 1291/1350 (96%), Gaps = 6/1350 (0%)
Strand=Plus/Plus
Query 5 TTTCGTGGCTGGAATCGATGGGGAAGGGCCCCTTATCGTTTCGCCGTCTTTCGAGCATCC 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TTTCGTGGCTGGAATCCATGGGGAAGGGCCCCTTATCGTTTCGCCGTCTTTCAAGCATCC 239
Query 65 GTCACCGGAAAAAAGGTTCTGCCGTGAAGGATGACTCCGCACAGACATCGACGCCTTCAT 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCACCGGAAAAAAGGTTCTGCGGTGAAGGATGACTCCGCACAGACATCGACGCCTTCAT 299
Query 125 CTCCACCGTCTCCCCTACCGATTAATGCTGGCGGACCGATTGTAGGAGGGACGGGGAAGG 184
|||||||| |||||||||||||| ||||||||||| || ||| |||| |||||||||||
Sbjct 300 CTCCACCGCCTCCCCTACCGATTCATGCTGGCGGATCGGCTGTGGGAGCGACGGGGAAGG 359
Query 185 CGAAGAAGAAAACCGGTGGAGCTAGGCTGTGGATGAGGTTTGATCGGACTGGTGCGATGG 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 CGAAGAAGAAAACCGGAGGAGCTAGGCTGTGGATGAGGTTTGATCGGACTGGTGCTATGG 419
Query 245 AAGTGGTGGAGTGCGATAAGAGTACAATCATCAAACGTGCTTCTGTTCCCGCTAGGGATT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTGGTGGAGTGCGATAAGAGTACAATCATCAAACGTGCTTCTGTTCCCGCTAGGGATT 479
Query 305 TGAGGATTCTTGGCCCTGTCTTCTCTCACTCTTCTAACATTCTCGCCAGAGAGAAAGCTA 364
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 TGAGGATACTTGGCCCTGTCTTCTCTCACTCCTCTAACATTCTCGCCAGAGAGAAAGCTA 539
Query 365 TTGTTGTGAATTTAGAGGTCATAAAGGCAATAGTTACTGCAGAAGAAGTGCTGCTT-TTG 423
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 540 TTGTTGTGAATTTAGAGGTCATAAAGGCAATAGTTACTGCAGAAGAAGTGTTG-TTGTTG 598
Query 424 GATCCTCTCCGTCCTGATGTTCTTCCTTTCGTTGAACGACTAAAGCAACAGTTTCCTCAG 483
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 GATCCTCTCCGTCCTGAAGTTCTTCCATTCGTTGAACGACTAAAGCAACAGTTTCCTCAG 658
Query 484 AGGAATGGGACTGAAACTGCACTGCAAGCTTCTGCAAATGTACAATCTCCTCTTGATCCA 543
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 AGGAATGGGAATGAAAATGCACTGCAAGCTTCTGCGAATGTACAATCTCCTCTTGATCCA 718
Query 544 GAAGCTGCAGAGGGTTTGCAGAGTGAGCTTCCTTTTGAATTTCAGGTCCTGGAGATTGCA 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GAAGCTGCAGAGGGTTTGCAGAGTGAGCTTCCTTTTGAGTTTCAGGTCCTGGAGATTGCA 778
Query 604 CTTGAGGTCGTCTGTTCATTTGTTGATAAAAGTGTTGCTGCTCTTGAGACAGAATCTTGG 663
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 779 CTTGAGGTCGTCTGCTCATTTGTTGATAAAAGTGTGGCTGCTCTTGAGACAGAAGCTTGG 838
Query 664 CCTGTCCTTGATGAACTAACCAAGAATGTCAGCACTGAGAATCTTGAATATGTACGAAGT 723
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTGTCCTTGATGAACTCACTAAGAATGTCAGCACTGAGAATCTTGAATATGTACGAAGT 898
Query 724 TTGAAAAGTAATCTCACCCGCTTGTTAGCCCGTGTGCAGAAGGTGAGAGATGAACTCGAA 783
|||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||
Sbjct 899 TTGAAAAGTAATCTCACCCGCTTGCTAGCTCGTGTACAAAAGGTGAGAGATGAACTCGAG 958
Query 784 CATTTGTTAGATGACAACGAAGACATGGCAGACTTATACTTAACAAGGAAATGGATCCAG 843
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 CATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAG 1018
Query 844 AACCAGCAAACCGAGGCAATACTTGCGGGGACAGCATCAAACAGCATTGTCGC-CCCAGC 902
||||||||||||||||||||||| ||||| ||||||||||||||||||| | | ||||||
Sbjct 1019 AACCAGCAAACCGAGGCAATACTGGCGGGTACAGCATCAAACAGCATTGCC-CTCCCAGC 1077
Query 903 ACATAATACATCAAATCTTCACCGGCTCACATCAAACAGAAGCGCGAGTATGGTGACGAG 962
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 ACATAATACATCAAATCTTCACCGGCTCACATCAAACAGAAGTGCGAGTATGGTGACGAG 1137
Query 963 CAATACAGAGGAAGATGACGTGGAAGATCTGGAGATGTTGCTGGAGGCATACTTCATGCA 1022
|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 1138 CAATACAGAGGAAGATGACGTGGAGGATTTGGAGATGTTGTTGGAGGCATACTTCATGCA 1197
Query 1023 ACTGGAGGGAATGCGGAACAAGATTCTTACAGTGAGGGAGTACATTGACGACACAGAAGA 1082
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACTGGATGGAATGCGGAACAAGATTCTTACAGTGAGGGAGTACATTGACGACACAGAAGA 1257
Query 1083 CTACGTGAACATACTACTGGACAATCAACGAAACGAACTGATCCAGCTGCAGCTGACGCT 1142
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTACGTGAACATTCAACTGGATAATCAACGAAACGAACTGATCCAGCTGCAGCTGACGCT 1317
Query 1143 GACCATAGCATCGTTTGCAATAGCCGCAGAGACTTTGTTGGCCAGCTTGTTCGGAATGAA 1202
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1318 GACCATAGCCTCGTTTGCAATAGCCGCAGAGACATTGTTGGCCAGCTTGTTTGGAATGAA 1377
Query 1203 CATACCATGTCCATTGTATAACACACACGGCATCTTTGGTTACTTTGTGTGGAGTGTTAC 1262
|||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct 1378 CATACCATGTCCATTGTATAGCATACATGGCGTCTTTGGTTACTTTGTGTGGAGTGTTAC 1437
Query 1263 TGCACTTTGCATTGTGCTTTTCATGGTCACCCTTGGTTACGCCAGGTGGAAGAAGCTGCT 1322
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 TGCACTTTGCATTGTGCTTTTCATGGTCACTCTTGGTTACGCCAGGTGGAAGAAGCTGCT 1497
Query 1323 AGGCTCATAGTCTCTTTCTCTCTCTTACAA 1352
||||||||| |||| |||||||||||||
Sbjct 1498 AGGCTCATAATCTCC--CTCTCTCTTACAA 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5