BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938903
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58990.1 | Symbols: IPMI1 | isopropylmalate isomerase 1 | ch... 1146 0.0
> AT3G58990.1 | Symbols: IPMI1 | isopropylmalate isomerase 1 |
chr3:21797058-21798303 REVERSE LENGTH=1246
Length=1246
Score = 1146 bits (620), Expect = 0.0
Identities = 732/783 (93%), Gaps = 19/783 (2%)
Strand=Plus/Plus
Query 3 TTACGAAGTAGCAAAACAATGGCGATTTCTCAGCAATTTCTAAACCCTACACTCTTCAAA 62
||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1 TTAAGAAGTAGCAGAACAATGGCGACTTCTCAGCAATTTTTAAACCCTACACTCTTCAAA 60
Query 63 TCCTTAGCTTCCTCAAAC-AAAA---A-G-----TC-G-CCTTCTCCTTTCTTTCGACTC 110
|||||||||||||||||| |||| | | || | || ||||||||||| | ||||
Sbjct 61 TCCTTAGCTTCCTCAAACAAAAACTCATGTACTCTCTGCCCATCTCCTTTCTTGCAACTC 120
Query 111 AAGTCCACCTCCACAACTTTCAATTTCAAACCACTTACTTCCTCCTCCTCTGCCACAATC 170
|||||| ||||||||| |||||||| |||||||||||||||||||| | | ||||| |||
Sbjct 121 AAGTCCGCCTCCACAATTTTCAATTACAAACCACTTACTTCCTCCT-C-C-GCCACGATC 177
Query 171 ATCACACGCGCCGCCGTATCATCCTCTGATTCAGGCGAGTCAA-AATCCAGAGAAACTTT 229
|||||||||| ||| | ||||||||| |||||||||||||||| || ||||||| |||||
Sbjct 178 ATCACACGCGTCGCTGCATCATCCTCCGATTCAGGCGAGTCAATAA-CCAGAGAGACTTT 236
Query 230 CCACGGCCTCTGCTTTGTCTTGAAAGACAACATCGACACCGATCAAATCATCCCCGCCGA 289
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 237 CCACGGCCTCTGCTTCGTCTTGAAAGACAACATCGACACCGATCAAATAATCCCCGCCGA 296
Query 290 GTACGGCACTCTCATCCCTTCGATTCCAGAAGATCGCGA-AAAGCTCGGCTCCTTCGCGC 348
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 297 GTACGGCACTCTCATCCCTTCGATTCCAGAAGATCGCGAGAAA-CTCGGCTCTTTCGCGC 355
Query 349 TTAACGGCTTACCAAAATTCTACAATGAACGTTTCGTTGTTCCAGGAGAGATGAAATCAA 408
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 TTAACGGCTTACCAAAATTCTACAACGAACGTTTCGTTGTTCCAGGAGAGATGAAATCAA 415
Query 409 AGTACTCCGTCATCATCGGCGGCGATAATTTCGGTTGCGGATCTTCCCGCGAACACGCTC 468
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGTACTCAGTCATCATCGGCGGCGATAATTTCGGTTGCGGATCTTCCCGCGAACACGCTC 475
Query 469 CGGTTTGCCTCGGCGCGGCTGGAGCTAAAGCCGTGGTGGCGGAATCGTACGCTAGGATCT 528
| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 CAGTTTGTCTCGGCGCGGCGGGAGCTAAAGCTGTGGTGGCGGAATCGTACGCTAGGATCT 535
Query 529 TCTTCAGGAACTGTGTAGCTACAGGTGAGATCTTCCCGCTCGAATCGGAGGTTAGGATTT 588
| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 536 TTTTCAGGAACTGTGTAGCTACAGGTGAGATTTTCCCGTTGGAATCGGAGGTTAGGATTT 595
Query 589 GCGACGAGTGCAAAACAGGGGATGTGGTGACCATCGAACACAAGGAAGACGGTAGTAGTT 648
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 GCGACGAGTGCAAAACAGGGGATGTGGTGACAATCGAACACAAGGAAGACGGTAGTAGTT 655
Query 649 TGCTGATCAATCATACGACGAGGAAAGAATACAAACTTAAACCGCTAGGTGATGCCGGTC 708
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 656 TGCTGATCAATCATACGACGAGGAAAGAATACAAACTGAAACCGCTCGGTGATGCCGGTC 715
Query 709 CGGTGATCGACGCCGGTGGAATCTTCGCTTATGCAAGAAAAGCCGGCATGATTCCTTCTG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CGGTGATCGACGCCGGTGGAATCTTCGCTTATGCAAGAAAAGCCGGCATGATTCCTTCTG 775
Query 769 CTT 771
|||
Sbjct 776 CTT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5