BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938912
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59010.1 | Symbols: PME61 | pectin methylesterase 61 | chr3:... 2519 0.0
AT2G43050.1 | Symbols: ATPMEPCRD | Plant invertase/pectin methy... 551 8e-156
> AT3G59010.1 | Symbols: PME61 | pectin methylesterase 61 | chr3:21802805-21805214
REVERSE LENGTH=1916
Length=1916
Score = 2519 bits (1364), Expect = 0.0
Identities = 1537/1620 (95%), Gaps = 14/1620 (1%)
Strand=Plus/Plus
Query 1 AAAGTTGTACATATATCACAATGGCAACTACATCATTCTCATTACCAAATCATAAGCTCC 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 97 AAAGTTGCACATATATCACAATGGCAACTACATCATTCTCATTACCAAATCATAAGTTCG 156
Query 61 GGATCAAACTAATGTTGTTCCTAGTCTTGAA-C-C---T--C-TC-G---TCAGTATTTT 108
||||||||||||||||||||||||||||||| | | | | || | |||||||||
Sbjct 157 GGATCAAACTAATGTTGTTCCTAGTCTTGAACCTCTTGTCCCTTCAGACTTCAGTATTTG 216
Query 109 CCCATTCATCAAACTCTAAATTCACAAAATTCTCAAGAAACCCAAACTCCGATTCATCTT 168
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 217 CCCATTCATCAAACTCTAAATTCACAAAAATCTCAAGACACCCAAACTCCGATTCATCTT 276
Query 169 CAAGAACCAAACCCTCAACTTCTTCCAACAAAGGGTTTCTCAACTCAGTCCAACTCAGCT 228
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 277 CGAGAACCAAACCCTCAACTTCTTCCAACAAAGGGTTTCTCAGCTCAGTCCAACTCAGCT 336
Query 229 TGGAAGACGCTCTCTTTGCTCGTTCTCTCGCCTTTAATCTCACGCTTTCGCACCGTACCT 288
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 337 TGGACCACGCTCTCTTTGCTCGTTCTCTCGCCTTTAATCTCACGCTTTCGCACCGTACTT 396
Query 289 CTCAATCCCTCATGCTCGACCCTGTCAACGACTGCCTTGAGCTACTTGACGACACGCTCG 348
||||| |||||||||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 397 CTCAAACCCTCATGCTAGATCCTGTCAACGACTGCCTTGAGCTGCTTGACGACACCCTCG 456
Query 349 ACATGTTGTCTCGCATCGTTGTCACCAAGCGTAAAGATCACGTCAACGACGATGTACATA 408
||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 457 ACATGTTGTATCGCATCGTTGTCATCAAGCGTAAAGATCACGTCAATGATGATGTACATA 516
Query 409 CGTGGCTAAGCGCGGCGTTGACTAATCAAGAGACTTGTAAGCAAAGCCTCAGTGAGAAAT 468
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 517 CGTGGCTAAGCGCGGCGTTGACTAATCAAGAGACATGTAAGCAAAGCCTCAGTGAGAAAT 576
Query 469 CTAGCTTCAACAAAGACGGAATCGCGATAGATTCCTTCGCAAGAAACCTCACCGGTTTAC 528
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 577 CTAGCTTCAACAAAGAAGGAATTGCGATAGATTCTTTCGCAAGAAACCTCACCGGTTTAC 636
Query 529 TGACCAATTCACTAGACATGTTCGTGTCCGATAAGCGGAAGAGTTCTTCTTCGTCTCGTC 588
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||
Sbjct 637 TGACCAATTCACTAGACATGTTCGTGTCTGATAAACAGAAGAGTTCTTCTTCGTCTAATC 696
Query 589 TAACTGGTGGCCGGAAACTGTTGTCTGATCATGATTTTCCGTCGTGGTTTTCTAT-GTCA 647
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||
Sbjct 697 TAACTGGTGGCCGGAAACTGTTGTCCGATCATGATTTTCCGACGTGGGTTTCT-TCGTCA 755
Query 648 GACCGGAAGCTTTTAGAAGCTTCAGTAGAAGAACTGAGACCTCACGCAGTGGTGGCAGCC 707
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 756 GACCGGAAGCTTTTAGAAGCTTCAGTAGAAGAGCTGAGACCTCACGCTGTGGTGGCAGCC 815
Query 708 GACGGAAGCGGGACACACATGAGCATAGCCGAAGCGTTGGCGTCTTTGGAGAAGGAAAGT 767
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 816 GACGGAAGCGGGACTCACATGAGCGTAGCCGAAGCGTTGGCGTCTTTGGAGAAGGGAAGT 875
Query 768 GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATCTCAATATTCCGAGC 827
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 876 GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATCTGAATATTCCGAGC 935
Query 828 AAACAGAAGAACGTTATGTTGGTTGGTGATGGGAAGGGCAAAACAGTCATTATCGGTAGC 887
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 936 AAACAGAAGAACGTTATGTTGGTCGGTGACGGGAAGGGCAAAACAGTCATTGTCGGTAGC 995
Query 888 AGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGAT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGAT 1055
Query 948 GGATTCATAGCTCGGGACATAACATTCGTAAACAGTGCCGGACCAAACTCGGAGCAAGCT 1007
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1056 GGATTCATAGCTCGAGACATAACATTCGTGAACAGTGCCGGACCAAACTCGGAGCAAGCT 1115
Query 1008 GTAGCATTACGGGTCGGATCAGACAGGTCCGTGGTATACAGATGCTCAATCGATGGTTAC 1067
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1116 GTAGCATTACGGGTCGGATCAGATAGGTCCGTGGTATACAGATGCTCAATAGATGGGTAC 1175
Query 1068 CAAGACTCGCTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACTGACATTACCGGC 1127
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1176 CAAGACTCACTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACCGACATAACAGGC 1235
Query 1128 ACCGTTGATTTCATCTTCGGAAACTCCGCCGTTGTTTTCCAAAGCTGCAACCTCGTATCT 1187
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1236 ACCGTCGATTTCATCTTCGGAAACTCTGCCGTCGTTTTCCAAAGCTGCAACCTCGTATCT 1295
Query 1188 CGAAAAGGCTCCTCGGACGAGAACTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAG 1247
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CGTAAAGGCTCCTCGGACCAGAACTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAG 1355
Query 1248 AACACCGGTATTTCTATCCATAATTGCAGAATCACCGGTTCGACCAAGACTTATTTAGGT 1307
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1356 AACACCGGTATTTCTATCCATAATTGCAGAATAACCGGTTCGACCAAGACTTACTTGGGT 1415
Query 1308 CGGCCATGGAAGCAGTATTCGAGGACAGTTGTGATGCAATCGTTTATAGACGGCTCGATT 1367
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1416 CGTCCATGGAAGCAGTATTCGAGGACTGTTGTGATGCAATCGTTTATAGACGGCTCGATT 1475
Query 1368 CACCCTTCGGGTTGGTCTCCTTGGTCGAGTAGCTTTGCTTTGAAGACTCTTTATTACGGA 1427
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1476 CACCCTTCGGGTTGGTCTCCTTGGTCGAGTAACTTTGCTTTGAAGACTCTTTATTACGGA 1535
Query 1428 GAATTTGGGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAGTTGGGCGGGGTAT 1487
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1536 GAATTTGGGAATTCGGGTCCTGGATCATCGGTGTCGGGTCGGGTTAGTTGGGCCGGGTAT 1595
Query 1488 CACCCGGCGTTGACGTTGACTGAAGCTCAGGGGTTTACCGTTTCGGGTTTCATTGACGGG 1547
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1596 CACCCGGCGTTGACGTTGACTGAAGCTCAAGGGTTTACTGTTTCGGGTTTCATTGACGGG 1655
Query 1548 AAATCGTGGTTGCCGTCAACAGGTGTCGTTTTCGACTCTGGTCTTTTATAATTTAAATGA 1607
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1656 AATTCTTGGTTGCCGTCAACAGGTGTCGTTTTCGACTCTGGCCTTTTATAATTTAAGTGA 1715
> AT2G43050.1 | Symbols: ATPMEPCRD | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:17902484-17904443 FORWARD
LENGTH=1850
Length=1850
Score = 551 bits (298), Expect = 8e-156
Identities = 749/962 (78%), Gaps = 49/962 (5%)
Strand=Plus/Plus
Query 651 CGGAAGCTTTTAGAAGCTTCAGTAGAAGAACTGAGA-CCTCACGCAGTGGTGGCAGCC-G 708
|||| |||| |||||||| | || || || |||| | | | || |||||||| || |
Sbjct 622 CGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGA-ATGTTGATGCGGTGGTGGC-TCCTG 679
Query 709 ACGGAAGCGGGACACACATGAGCATAGCCGAAGCGTTGGCGTCTTTG-GAGAAG-GA-AA 765
||||||| |||||||||| | ||||| ||||| ||| |||| | | || || |
Sbjct 680 ACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTTGTCTACGTCATTAGCGAGTA 739
Query 766 GT---GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATC-TCAATATT 821
|| ||||| | | ||| | ||| |||||| || ||| | ||||| | |||| |||
Sbjct 740 GTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATATCATGAGAA-CATCAACATT 798
Query 822 CCGAGC-AAACAGAAGAACGTTATGTTGGTTGGTGATGGGAAGGGCAAAACAGTCATTAT 880
|||| | || ||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 799 CCGA-CGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAAGGGTAAAACAGTCATTGT 857
Query 881 CGGTAGCAGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCAT 940
|||||||||||||||||||||||||||| ||||||| || | || || |||||||| ||
Sbjct 858 AGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAACTGCAACCGTCGCCGCTAT 917
Query 941 GGGAGATGGATTCATAGCTCGGGACATAACATTCGTAAACAGTGCCGGACC-AAACTCGG 999
||| || || |||||||| |||||||| |||||||| |||| |||||||| ||| ||||
Sbjct 918 GGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAACGCCGGACCCAAA-TCGG 976
Query 1000 AGCAAGCTGTAGCATTACGGGTCGGATCAGACAGGTCCGTGGT--ATACAGATGCTCAAT 1057
||||||| || || | || |||||| |||| | ||||| || || | |||||||| |
Sbjct 977 AGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGTGCAT-C-GATGCTCAGT 1034
Query 1058 CGATGGTTACCAAGACTCGCTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACTGA 1117
|| || |||||||| || |||||||| | |||||||||||| ||||||||||| || ||
Sbjct 1035 GGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATTCTATAGAGAGACGGA 1094
Query 1118 CATTACCGGCACCGTTGATTTCATCTTCGGAAACTCCGCCGTTGT-TTTCCAAAGCTGCA 1176
|| ||||||||||| |||||||| ||||||||||||||||| || |||| || |||||
Sbjct 1095 TATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGTATTTC-AATCCTGCA 1153
Query 1177 ACCTCGTATCTCGAAAAGGCTCCT-C-GGA-C-GAGAA-CTACGTCACGGCCCAAGGCCG 1231
|| ||| | || ||| || | | || | ||||| || ||| ||||| ||||| ||
Sbjct 1154 ACATCGCCGCACGGAAAC-CTT-TACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACG 1211
Query 1232 GTCCGACCCGAACCAGAACACCGGTATTTCTATCCATAATTGCAGAATCAC--CGGT-TC 1288
| | | ||| || |||||||| || | || || || ||||| ||||| ||| ||
Sbjct 1212 GAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGATCACGGCGGAATC 1271
Query 1289 GACCAAGACTTAT-TTAGGTCGGCCATGGAAGCAGTATTCGAGGACAGTTGTGATGCAAT 1347
|| ||||||| || |||||||| |||||| ||||||||||||| || ||||||||||
Sbjct 1272 GAT---GACTTATCTT-GGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAAT 1327
Query 1348 CGTTTATAGACGGCTCGATTCACCCTTCGGGTTGGTCTCCTTGGTCGAGTAGCTTT-GCT 1406
| ||||| | ||| |||||||| || ||||||||||||||||||||| || | ||| | |
Sbjct 1328 CATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG-TTTCGGT 1386
Query 1407 TTGAAGA-CTCT-TTATTACGGAGAATTTGGGAATTCGGGTCCTGGATCATCGGTTTCGG 1464
| || | |||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1387 CTCAA-ATCTCTGTT-TTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGTTTCGG 1444
Query 1465 GTCGGGTTAGTTGG-GCGGGGTATCACCCGGCGTTGACGTTGACTGAAGCTCAGGGGTTT 1523
||||||||| ||| | ||| | ||| ||| | |||||| |||| ||||| | ||
Sbjct 1445 GTCGGGTTAAATGGAGTGGG-TGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAAATTC 1503
Query 1524 ACCGTTTCGGGTTTCATTGACGGGAA-ATCGTGGTTGCCGTCAACAGGTGTC-GTTTTCG 1581
|| || || |||| ||||||||||| || |||||||||||||| || || |||| ||
Sbjct 1504 ACTGTGGCGAGTTTTATTGACGGGAATATA-TGGTTGCCGTCAACGGGCGTTAGTTT-CG 1561
Query 1582 AC 1583
||
Sbjct 1562 AC 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79919267640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5