BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938914
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59030.1 | Symbols: TT12, ATTT12 | MATE efflux family protei... 2438 0.0
> AT3G59030.1 | Symbols: TT12, ATTT12 | MATE efflux family protein
| chr3:21819071-21821440 FORWARD LENGTH=1729
Length=1729
Score = 2438 bits (1320), Expect = 0.0
Identities = 1485/1566 (95%), Gaps = 6/1566 (0%)
Strand=Plus/Plus
Query 1 GAGGAACTAATAAACGGACCATGAGCTCCACCCAGACATACGAGCCGTTATTGACTCGAC 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 34 GAGGAACTAATAAACGGACCATGAGCTCCACAGAGACATACGAGCCGTTATTGACACGAC 93
Query 61 TCCACTCCTATTCTCAGATAACTGAACGGTCTTCGCCGGAGATAGAGGAGTTTCTACGCC 120
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 94 TCCACTCGGATTCTCAGATAACTGAACGGTCTTCGCCAGAGATAGAGGAGTTTCTCCGCC 153
Query 121 GTCATGTATCCACGGTGACGCCACGGTGGTGGCTAAAGCTGGCCGTGTGGGAGTCAAAGC 180
||| || |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 154 GTCGTGGATCCACAGTGACACCACGGTGGTGGCTAAAGCTGGCAGTGTGGGAGTCAAAGC 213
Query 181 TTCTATGGACACTCTCTGGAGCCTCTATAGTGGTCTCTGTTCTGAATTACATGCTCAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TTCTATGGACACTCTCTGGAGCCTCTATAGTGGTCTCTGTTCTGAATTACATGCTCAGCT 273
Query 241 TCGTCACCGTCATGTTCACCGGCCATCTCGGTTCTCTTCAGCTCGCCGGCGCTTCCATCG 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 274 TCGTCACCGTCATGTTCACCGGTCATCTCGGTTCTCTTCAGCTCGCCGGCGCTTCCATCG 333
Query 301 CCACTGTGGGCATCCAAGGTCTAGCTTACGGTATCATGTTGGGAATGGCGAGCGCGGTCC 360
|||| || || |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 334 CCACCGTCGGAATCCAAGGCCTAGCTTACGGTATCATGTTAGGAATGGCGAGCGCGGTCC 393
Query 361 AGACAGTGTGTGGTCAAGCGTACGGAGCGAGACAGTACTCGTCAATGGGAATAATCTGCC 420
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 394 AAACAGTGTGTGGTCAAGCGTACGGAGCGAGACAGTACTCATCAATGGGAATAATCTGCC 453
Query 421 AACGAGCCATGGTCTTGCACCTTGCAGCTGCATTCCTCCTCTCGTTCCTCTACTGGTACT 480
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 454 AACGAGCCATGGTCTTGCACCTTGCAGCTGCAGTCTTCCTCACGTTCCTCTACTGGTACT 513
Query 481 CGGGTCCAATCC-TAAAAGCAATGGGCCAATCCGTAGCCATAGCACACGAGGGTCAGATC 539
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CGGGTCCAATCCTTAAAA-CAATGGGCCAATCCGTAGCCATAGCACACGAGGGTCAGATC 572
Query 540 TTTGCACGCGGAATGATTCCACAGATTTACGCTTTTGCCCTCGCTTGCCCGATGCAGAGG 599
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 573 TTTGCACGTGGAATGATTCCACAAATTTACGCATTTGCCCTCGCTTGCCCGATGCAGAGG 632
Query 600 TTTCTTCAAGCTCAGAACATAGTGAACCCTTTGGCTTACATGTCTTTAGGAGTTTTCTTG 659
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 633 TTTCTTCAGGCTCAGAACATAGTGAACCCTTTGGCTTACATGTCCTTAGGAGTTTTCTTG 692
Query 660 CTCCACACGTTACTCACGTGGCTGGTTACCAACGTGCTGGATTTCGGCTTGCTTGGTGCG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 693 CTCCACACGTTACTCACGTGGCTGGTTACCAACGTGCTGGATTTCGGCTTGCTTGGGGCG 752
Query 720 GCTCTGATTCTCAGTTTCTCATGGTGGCTGCTTGTGGTTGCGAACGGTCTGTATATCGTG 779
|||||||||||||||||||||||||||||||| || | || ||| ||| |||||||| ||
Sbjct 753 GCTCTGATTCTCAGTTTCTCATGGTGGCTGCTAGTAGCTGTGAATGGTATGTATATCTTG 812
Query 780 ATGAGCACGAGTTGTAAGGAGACTTGGACCGGGTTTTCAACTAGGGCATTTACAGGGATA 839
|||||| ||| |||||||||||| ||||| ||||||||||| |||||||||| |||||||
Sbjct 813 ATGAGCCCGAATTGTAAGGAGACATGGACAGGGTTTTCAACGAGGGCATTTAGAGGGATA 872
Query 840 TGGCCTTACTTCAAGCTCACGGTAGCTTCAGCAGTCATGCTATGTTTGGAGATATGGTAC 899
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 873 TGGCCTTACTTCAAGCTCACGGTAGCTTCAGCAGTTATGCTATGTTTGGAGATATGGTAC 932
Query 900 AACCAAGGGCTAGTGATTATCTCTGGTTTACTCACCAATCCGACAATTTCTCTAGACGCG 959
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 933 AACCAAGGGCTAGTGATTATCTCTGGTTTACTCTCCAATCCGACAATTTCTCTAGACGCT 992
Query 960 ATTTCGATTTGCATGTATTACTTGAATTGGGATATGCAGTTCATGCTTGGTCTAAGTGCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATTTCGATTTGCATGTATTACTTGAATTGGGATATGCAGTTCATGCTTGGTCTAAGTGCA 1052
Query 1020 GCAATCAGTGTGCGAGTGAGCAATGAGCTAGGAGCGGGAAATCCACGAGTGGCTAAGTTA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1053 GCAATCAGTGTGCGAGTGAGCAATGAGCTAGGAGCGGGAAATCCACGAGTGGCTATGTTA 1112
Query 1080 TCAGTAGTGGTGGTTAACGTTACGACGGTTCTCATTAGC-CTAGTTCTCTGTGTCATTGT 1138
||||||||||| || ||| | ||||| |||||||| ||| | ||||||||||||||| ||
Sbjct 1113 TCAGTAGTGGTTGTCAACATCACGACTGTTCTCATCAGCTC-AGTTCTCTGTGTCATCGT 1171
Query 1139 GCTCGTGTTCCGCGTCGGCCTTAGCAAAGCTTTCACGAGCAACGCAGAAGTTATAGCAGC 1198
||| ||||||||||| |||||||||||||| ||||| ||| | |||||||||||||||||
Sbjct 1172 GCTTGTGTTCCGCGTTGGCCTTAGCAAAGCCTTCACCAGCGATGCAGAAGTTATAGCAGC 1231
Query 1199 CGTCTCTGACCTCTTTCCTCTTCTCGCCATTTCCATTTTTCT-AAACGGAATCCAACCAA 1257
|||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||
Sbjct 1232 CGTCTCTGACCTCTTTCCTCTTCTCGCCGTTTCCATTTT-CTTAAACGGAATCCAGCCAA 1290
Query 1258 TTCTCTCAGGGGTTGCTATTGGGAGTGGGTGGCAAGCAGTGGTGGCCTATGTGAATCTTG 1317
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1291 TTCTCTCTGGGGTTGCTATTGGGAGTGGGTGGCAAGCAGTGGTGGCTTATGTGAATCTTG 1350
Query 1318 TTACTTACTATGTCATTGGTCTTCCTATTGGCTGTGTTCTTGGCTTCAAAACTAGTCTTG 1377
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1351 TTACGTACTATGTCATTGGTCTTCCTATTGGCTGTGTCCTTGGCTTCAAAACCAGTCTTG 1410
Query 1378 GAGTTGCTGGGATCTGGTGGGGGATGATTGCAGGAGTCATACTTCAAACCCTAACTTTGA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GAGTTGCTGGGATCTGGTGGGGGATGATTGCAGGAGTCATACTTCAAACCCTAACTTTGA 1470
Query 1438 TTGTTCTTACACTTAGAACCAATTGGACTTCCGAGGTAGAAAATGCAGCTCAGAGAGTAA 1497
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 TTGTTCTTACACTTAAAACTAATTGGACTTCCGAGGTAGAAAATGCAGCTCAGAGAGTAA 1530
Query 1498 AGACCTCGGCAACTGAGAATCAAGAGATGGCTTACGAAGGCATTTAAGAGAACAGCAACA 1557
|||| ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||
Sbjct 1531 AGACTTCGGCAACTGAGAATCAAGAGATGGCTAACGCAGGTGTTTAAGATAACAGCAACA 1590
Query 1558 GCGACT 1563
| ||||
Sbjct 1591 GTGACT 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5