BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938942

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 | chr3...   630    2e-180


> AT3G59280.1 | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:21908913-21910722 
REVERSE LENGTH=907
Length=907

 Score =  630 bits (341),  Expect = 2e-180
 Identities = 375/391 (96%), Gaps = 3/391 (1%)
 Strand=Plus/Plus

Query  4    ATCAAGCAATCGGCTGCCATGG-TGGGGAGATTACTTGCAAACTTGATTGTGATGGGTTC  62
            |||||  ||||||||||||||| | |||||| |||||||||| |||||||||||||||||
Sbjct  186  ATCAATTAATCGGCTGCCATGGCT-GGGAGACTACTTGCAAATTTGATTGTGATGGGTTC  244

Query  63   TGGGATCATTGGTCGTGCCGTCTTTCAAGCCTATCGTCAAGCACTTGCTAATGCGTCTAA  122
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  245  TGGGATCATTGGTCGTGCTGTCTTTCAAGCCTATCGTCAAGCACTTGCTAATGCGTCTAA  304

Query  123  ATCTGGTGTTGCTCAGGAAGCAATGCAAAATGGAGTACGTAAAGCAGGGAAAGCCATCAC  182
            |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  305  ATCTGGTGTTGCGCAGGAAGCAATGCAAAATGGAGTACGTCAAGCAGGGAAAGCCATCAC  364

Query  183  TGAGCAAGAGGCTAGGCAGATTCTTGGTGTAACCGAGAAGACCTCTTGGGAAGAGATATT  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  TGAGCAAGAGGCTAGGCAGATTCTTGGTGTAACCGAGAAGACCTCTTGGGAAGAGATATT  424

Query  243  GCAGAAATATGACAAACTGTTTGAGAATAATGCCAAAGCTGGGAGCTTTTACCTTCAATC  302
             |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  425  ACAGAAATATGACAAACTGTTTGAGAATAATGCGAAAGCAGGGAGCTTTTACCTTCAATC  484

Query  303  TAAAGTTCATCGAGCCAAAGAATGTCTAGAAGTTGTGTACAGAAGCCAAGGCAACGGTAC  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  TAAAGTTCATCGAGCCAAAGAATGTCTAGAAGTTGTGTACAGAAGCCAAGGCAACGGTAC  544

Query  363  ACCTAGTTAAGACCTTAATCGTTAT-TTTTC  392
            ||||||||||||||||| || || | |||||
Sbjct  545  ACCTAGTTAAGACCTTACTCTTTTTGTTTTC  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5