BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938950
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr... 1009 0.0
> AT4G37510.1 | Symbols: | Ribonuclease III family protein | chr4:17626104-17628947
REVERSE LENGTH=1862
Length=1862
Score = 1009 bits (546), Expect = 0.0
Identities = 600/627 (96%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 12 AAAGAAGCAATGGAGCTTTGTTCTTCATCTTCATCATCTTCACTCCTTCGCATTTCTTCA 71
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||
Sbjct 85 AAAGAAGCAATGGAGCTTTGTTCTTCATCTCCATCTTCTTCTCTCCTTCGCATTTGTTCA 144
Query 72 TCTTCAGCACCAGAAATCTCATTTTCACCTTCAATTTCTCGGTTCTCATCTAAAATCCAA 131
||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| ||||
Sbjct 145 TCTTCAGCACCAGAAATCTCATTTTCATCTTCAATTTCTCAGTTCCCATCTAAAACCCAA 204
Query 132 TCGATTCTCACAAAACCCAGATTCCAAAATCTCCGAATTTGCGCTTCCGTGACTGCGGAG 191
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 205 TCGATTCTCACAAAATCCAGATTCCAAAATCTCCGAATTTGCGCTTCCGTGACGGCGGAG 264
Query 192 ACTCAAGGTCTTCCACGAGACAGTCCTCAACGTCTCCTCAAGGAGCTTGCGCAGCGTAAA 251
||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 265 ACTCAAGGTCTTCCACGAGACAGCCCTCAACGTCTCCTCAAAGAGCTAGCACAGCGTAAA 324
Query 252 ACAGCGACAGGACCGAAGAAAAAGGTTCCTCCGAAACGATTCATCTTAAGACCACCATTA 311
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 325 ACAGCGACAGGACCGAAGAAAAAGGTTCCTCCTAAACGATTCATCTTAAGGCCACCATTA 384
Query 312 GATGATAAGAAATTAGCTGAGAGATTCCTCAATAGTCCACAATTGTCTCTCAAGTCATTT 371
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 385 GACGATAAGAAATTAGCTGAGAGATTCCTCAATAGTCCACAATTGTCTCTGAAGTCGTTT 444
Query 372 CCTCTACTCATTTCTTGTCTTCCATCGTCAAAGCTTAACAACGCTGATAAAACATGGATC 431
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCTTTACTTAGCTCTTGTCTTCCATCGTCAAAGCTTAACAACGCTGATAAAACATGGATC 504
Query 432 GATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGGGTATTCTCTGGAGCCTTCAGAGATT 491
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 505 GATGAGTATCTTCTTGAAGTTAAACAAGCTTTAGGGTATTCTCTGGAACCTTCAGAGAGT 564
Query 492 TTAGGAGATGATAATCCGGCGAAACACTTTGATACGTTGCTCTATCTTGCGTTCCAGCAT 551
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 565 TTAGGAGATGATAATCCGGCGAAACACTTTGATACGTTGCTCTATCTTGCTTTCCAGCAT 624
Query 552 CCGTCTTGTGATAGGGCACGTGCGAGGCATGTGAAGAATGGGCACTCGAGGCTTTGGTTT 611
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CCGTCTTGTGATAGAGCACGTGCGAGGCATGTGAAGAATGGGCACTCGAGGCTTTGGTTT 684
Query 612 CTGGGTCAGTATGTGCTTGAGCTTGCT 638
|||||||||||||||||||||||||||
Sbjct 685 CTGGGTCAGTATGTGCTTGAGCTTGCT 711
Score = 802 bits (434), Expect = 0.0
Identities = 499/527 (95%), Gaps = 18/527 (3%)
Strand=Plus/Plus
Query 634 TTGCTTTGATTGGGAAGAGGTATCTCCCCAAATGGATTAAAGCAGCGAGCTTGCAAAATC 693
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 TTGCTTTGATTGGGAAGAGGTATCTCCCGAAATGGATTAAAGCAGCGAGCTTGCAAAATC 835
Query 694 TCATCTTTCCTTATGATGATATGGATAAGTTGATTA-G---GA-----A---A---G--- 735
|||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 836 TCATCTTTCCTTATGATGATATGGATAAGTTGATTAGGAAAGAGCGTGAGCCACCGGTTA 895
Query 736 AATCTGTGTTCTGGGCTTTGTTTGGTGCCATCTGTCTATGCTATGGGATGCCGGAAGTGT 795
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 896 AATCTGTGTTCTGGGCTTTGTTTGGTGCCATCTATCTATGTTTTGGGATGCCGGAAGTGT 955
Query 796 ATCGTGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATCGTGTACTTTTTGAGGTGTTTGGGATGGATCCAGATGCTGATGAGTGTCAGCCTCGAA 1015
Query 856 GCAGGAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGCAAAAAGCTAG 915
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 GCAGGAGACAGCTCGAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGGAAAAAGCTAG 1075
Query 916 GTTGGCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCGAGGC 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 GTTGGCAAGATATTGCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCTAGGC 1135
Query 976 TATTCAGAGCTTGTGTTCCACTGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTG 1035
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TATTCAGAGCTTGTGTTCCACCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTG 1195
Query 1036 ACAGCAAACCTAAAGTTATGCAGACCCTCGGATACCCTTTACCGATGAATGATAGAATCA 1095
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1196 ACAGCAAACCAAAAGTTATGCAGACCCTCGGATACCCTTTAACGATGAATGATAGAATCA 1255
Query 1096 AGGAGATAACTGAAGCAAGAAACATTGAACTTGGACTCGGTTTACAG 1142
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1256 AGGAGATAACTGAAGCAAGAAACATCGAACTTGGACTCGGTTTACAG 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62148274710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5