BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938953
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59380.1 | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farne... 1639 0.0
> AT3G59380.1 | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnesyltransferase
A | chr3:21944178-21945943 FORWARD LENGTH=1174
Length=1174
Score = 1639 bits (887), Expect = 0.0
Identities = 964/1002 (96%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 1 TTGGATCGGAGTCGAGGAACATGGATTTCGACGAGACCGTGCCACTGAGCCAGCGGTCGG 60
|||||||||||||| |||||||| |||||||||||||||||||||||||||| || | ||
Sbjct 12 TTGGATCGGAGTCGGGGAACATGAATTTCGACGAGACCGTGCCACTGAGCCAACGATTGG 71
Query 61 AGTGGGCAGACGTGGTCCCGTTGACTCAGGACGATGGCCCGAATCCGGTGGTGCCGATCG 120
||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| || |
Sbjct 72 AGTGGTCAGACGTGGTCCCATTGACTCAGGACGATGGTCCGAATCCAGTGGTGCCAATTG 131
Query 121 CCTACAAGGAAGAGTTCCGCGAGACTATGGATTACTTTCGTGCGATTTACTTTTCCGACG 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 132 CCTACAAGGAAGAGTTCCGCGAGACTATGGATTACTTCCGTGCGATTTACTTTTCCGACG 191
Query 181 AGCGATCTCCTCGCGCACTACGACTCACGGAAGAAACGCTCCGCTTAAACTCCGGCAACT 240
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 192 AGCGATCTCCTCGCGCACTACGACTCACGGAAGAAACCCTCCTCTTAAACTCCGGCAACT 251
Query 241 ACACAGTGTGGCATTTCAGGCGCCTAGTACTCGAGGCCCTTAATCACGACTTGTTTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ACACAGTGTGGCATTTCAGGCGCCTAGTACTCGAGGCCCTTAATCACGACTTGTTTGAAG 311
Query 301 AACTCGAGTTCATCGAACGCATTGCTGAGGATAACTCTAAGAACTACCAACTGTGGCATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AACTCGAGTTCATCGAACGCATTGCTGAGGATAACTCTAAGAACTACCAACTGTGGCATC 371
Query 361 ATCGGCGATGGGTTGCAGAGAAATTGGGTCCTGATGTTGCAGGGAGAGAACTTGAATTTA 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 372 ATCGGCGATGGGTTGCAGAGAAACTGGGTCCTGATGTTGCAGGGAGAGAACTTGAATTTA 431
Query 421 CCCGTAGAGTACTTTCACTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCCGTAGAGTACTTTCACTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGA 491
Query 481 CGCTACGGGCATTAGGAGGATGGGAAGATGAGCTCGATTACTGTCACGAGCTCCTTGAAG 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CACTACGGGCATTAGGAGGATGGGAAGATGAGCTCGATTACTGTCACGAGCTCCTTGAAG 551
Query 541 CTGACGTCTTTAACAATTCCGCCTGGAATCAGAGGTATTACGTCATTACTCGATCTCCTC 600
|||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||
Sbjct 552 CTGACGTCTTTAACAATTCCGCCTGGAATCAGAGGTATTATGTCATCACCCAATCTCCT- 610
Query 601 TT-TTGGGAGGCCTAGAAGCCATGAGAGAATCTGAAGTAAGCTACACAATCAAAGCAATT 659
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 611 TTGTTGGGAGGCCTAGAAGCCATGAGAGAATCTGAAGTAAGCTACACAATCAAAGCCATT 670
Query 660 TTAACCAATCCTGCAAACGAGAGCTCATGGCGATACCTGAAAGCTCTTTACAAAGACGAC 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 671 TTAACCAATCCTGCAAACGAGAGCTCATGGCGATACCTAAAAGCTCTTTACAAAGACGAC 730
Query 720 AAAGAATCCTGGATTAGTGATTCAAGTGTTTCCTCAGTCTGTTTGAATGTTTTATCCCGC 779
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 731 AAAGAATCCTGGATTAGTGATCCAAGTGTTTCCTCAGTCTGTTTGAATGTTCTATCCCGC 790
Query 780 ACGGATTGCTTCCATGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGCGATGGACTG 839
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 791 ACAGATTGCTTCCATGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGTGATGGACTG 850
Query 840 AGACCAACCAACGAGCATAAAGACTCAGTGAGAGCTCTAGCTAATGAAGAACCAGATACT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 851 AGACCAACCAACGAGCATAAAGACTCAGTGAGAGCTCTAGCTAATGAAGAACCAGAGACT 910
Query 900 AACTTGGCTATTTTGGTGTGTACCATTCTTGGTCGTGTAGATCCTATAAGAGCTAATTAT 959
|||||||| | |||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 911 AACTTGGCCAATTTGGTGTGTACTATTCTTGGTCGTGTAGATCCTGTAAGAGCTAACTAT 970
Query 960 TGGGCATGGAGAAAGAGCAAGATTACTGTAGCAGCAATGTGA 1001
||||||||||| |||||||||||||| || |||||||| |||
Sbjct 971 TGGGCATGGAGGAAGAGCAAGATTACAGTGGCAGCAATTTGA 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5