BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938956

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59410.2 | Symbols: GCN2 | protein kinase family protein | c...   215    2e-55


> AT3G59410.2 | Symbols: GCN2 | protein kinase family protein | 
chr3:21950188-21959266 FORWARD LENGTH=4300
Length=4300

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 212/254 (83%), Gaps = 23/254 (9%)
 Strand=Plus/Minus

Query  1    TTTCGATCTAAGAATTTCaaaaaaaaaTGGCCGA-GGTGATTGCCAGCACTAACAAAACC  59
            ||||||||||||||||||   ||||||||| ||| ||||| |||||||||||||||||||
Sbjct  234  TTTCGATCTAAGAATTTC---AAAAAATGG-CGACGGTGACTGCCAGCACTAACAAAACC  179

Query  60   TCCGATTACTTTTCTCTATATT-ATTCCGGCGTGAGGAATTTTGAAAAAGGGCTCTCCAA  118
            | ||||||||||||||||  || || ||||||| | |||||||||||||  |||||| | 
Sbjct  178  TTCGATTACTTTTCTCTAC-TTGATCCCGGCGTAAAGAATTTTGAAAAATCGCTCTC-AG  121

Query  119  AGGAATGTTTATATATCTGAGTCTCA-TAACCAAAATAAGCATTGACGGCTCTTCTCTTC  177
             | | ||||| |||||   ||||||| | || |||| || ||| |||||||||||| | |
Sbjct  120  TG-ATTGTTT-TATATA--AGTCTCAATGACGAAAA-AATCATCGACGGCTCTTCT-T-C  68

Query  178  AAAGATGGCGCCATCAGAGTTCTTCTATGTTGATCCTGTCCAGCAGCACAAAGCCTTCGA  237
            |||||||||||||||||||||||   ||||||||||||||||||| || ||  | ||| |
Sbjct  67   AAAGATGGCGCCATCAGAGTTCT---ATGTTGATCCTGTCCAGCA-CA-AA--CATTCAA  15

Query  238  AACGTCGTCGTATT  251
            |||| |||||||||
Sbjct  14   AACGCCGTCGTATT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5