BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938968
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59510.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2012 0.0
> AT3G59510.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:21988453-21989712 REVERSE LENGTH=1260
Length=1260
Score = 2012 bits (1089), Expect = 0.0
Identities = 1184/1231 (96%), Gaps = 2/1231 (0%)
Strand=Plus/Plus
Query 44 TCTTCTTCTTCTTCCTTAGTACTCATCATGTCCTTGTTCTTACTACTTCTTTCACTTATT 103
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 31 TCTGCTTCTTCTTCCTTAGTATTCATCATGTCCTTGTTCTTTCTACTTCTTTCACTTATT 90
Query 104 GTCCCTTCATCAGTTCTCTCAGCCACTCTTCGATCCGATATTCAAGCTTTAGAGTCTATA 163
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 91 GTCCCTTCATCAGTTCTATCAGCCACTCTTCGATCTGATATTCAAGCTCTAGAGTCTATA 150
Query 164 ATACGCAGCGTTGATCCAAGTTCCATCTCCCCATCCTCTTACCTCAGCACATGGGACTTC 223
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 151 ATACGCAGCGTTGATCCAAGTTCCATCTCTCCATCCTCTTACCTCAGCACATGGGACTTC 210
Query 224 TCTGAAGACCCATGTGAAGGGGCAGGGACGTTCTTGGGAGTTATGTGTTCTTTCCCTCTG 283
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 211 TCTGAAGACCCGTGTGAAGGCTCAGGGACGTTCTTGGGAGTTATGTGTTCTTTCCCTCTG 270
Query 284 GAGAACACGACGAGCAGGGTTATAGAGATCGATCTTGATGATGACGGTTATGACGGTTTC 343
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GAGAACACAACTAGCCGGGTTATAGAGATCGATCTTGATGATGACGGTTATGACGGTTTC 330
Query 344 CTCTCTGATGAAGTAGGAAACCTAACTGAGCTCACTGTCCTTAGCCTCAACAAGAACAGG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 331 CTCTCTGATGAAGTAGGAAACCTAACTGAGCTCACTGTCCTTAGCCTCAACAAAAACAGA 390
Query 404 TTCCGCGGTCCAGTACCAGAAACTGTGTTCCAGCTCAGGAAACTCACCAAACTCTCTCTA 463
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||
Sbjct 391 TTCCGCGGTCCAGTACCAGAATCTGTGTTCCAGCTCCGGAAACTTACCAAACTCTCACTA 450
Query 464 GCGGAGAATTTCTTCACCGGAGACATATCC-GCGGAAATCACGCGGCTCAAGGAGCTCAA 522
|| || ||||||||||| ||||||||| || || ||||||||||||||||||||||||||
Sbjct 451 GCAGAAAATTTCTTCACTGGAGACATA-CCAGCAGAAATCACGCGGCTCAAGGAGCTCAA 509
Query 523 AACCATAGACTTGTCCAAAAACAGTATCGCCGGCGAAATCCCGCCAAGGATCTCAGCCTT 582
|||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 510 AACCATCGACCTGTCGAAAAACAGTATCGCCGGTGAAATCCCTCCAAGGATCTCAGCCTT 569
Query 583 GAGAAGTTTGACTCACCTGATCCTATCAAACAACCATCTCGATGGAAGAATACCTGCGCT 642
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GAGAAGTTTGACTCACCTGGTCCTATCAAACAACCATCTCGATGGAAGAATACCTGCGCT 629
Query 643 CAACGGCTTGTGGAAGCTACAAGTATTAGAACTCGGTAACAATCATCTTTATGGAATGCT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CAACGGCTTGTGGAAGCTACAAGTATTAGAACTCGGTAACAATCATCTTTATGGAATGCT 689
Query 703 TCCTAAGCTTCCCCCAAGTCTAAGAACTCTATCACTATGTTTCAATAGCCTTGGAGGACG 762
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 690 TCCTAAGCTTCCCCCAAGTCTAAGAACTCTATCACTCTGTTTCAATAGCCTTGCAGGACG 749
Query 763 TATATCGCCCTTGCATAGGCTGAAACAGCTTGTGTCATTAGATGTGAGCCAGAACAGATT 822
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 750 TATATCACCCTTGCATAGGCTAAAACAGCTTGTGTCTTTAGATGTGAGCCAGAACAGATT 809
Query 823 CTCAGGAACCGTTGGCCATGAAATCCTAACATTCCCTGAAATTTCTCGCATCAATGTGTC 882
|||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 810 CTCAGGCACCGTTGGCCATGAAATCCTAACATTCCCTGAGATTGCACGCATCAATGTGTC 869
Query 883 TTTTAACCAGTTCATATCCATAGAGGTTATTAAAGTTACAGGATCACGCCTGCGCATGCT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TTTTAACCAGTTCATATCCATAGAGGTTATTAAAGTTACAGGATCACGCCTGCGCATGCT 929
Query 943 TGATGCTGAAGGAAACCATTTACAGGGTCACCTTCCGCTGAACCTGGCAACTTATGAAAA 1002
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 TGATGCTGAAGGAAACCATTTACAGGGGCACCTTCCGCTGAACCTGGCAACTTATGAAAA 989
Query 1003 CCTAAAGGATATCAATCTACGAAGCAACATGTTCTCTGGCGATATTCCTAGAATTTATGG 1062
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 990 CCTAAAGGATATCAATCTACGGAGCAACATGTTCTCTGGCGATATTCCTAGGATTTATGG 1049
Query 1063 GAAAAGACTGGAGAATTCATGGAGAAGCTTATACTTGGAGAACAACTACCTGTCAGGTAC 1122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GAAAAGACTGGAGAATTCATGGAGAAGCTTATACTTGGAGAACAACTACCTGTCAGGTAT 1109
Query 1123 ACTTCCTGAGGAGTTTCAAAAGATTTCCAAACAGATCAGAGGAAACCTATCGAATAACTG 1182
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1110 ACTTCCTGAGGAGTTTCAAAAGATTACCAAACAGATCAGAGGAAACCTATCGAACAACTG 1169
Query 1183 TCTGCAATGTCCCAAGAATGTTCAAATCTGCCAAGGAACACAAAAGCCAAAATCACAATG 1242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TCTGCAATGTCCTAAGAATGTTCAAATCTGCCAAGGAACACAAAAGCCAAAATCACAATG 1229
Query 1243 CACCAATGCAATGCTGGGGAGCTTGGAGTAG 1273
|||||||||||||||||||||||||||||||
Sbjct 1230 CACCAATGCAATGCTGGGGAGCTTGGAGTAG 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5