BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938970
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59530.1 | Symbols: LAP3 | Calcium-dependent phosphotriester... 1954 0.0
> AT3G59530.1 | Symbols: LAP3 | Calcium-dependent phosphotriesterase
superfamily protein | chr3:21993297-21995308 FORWARD LENGTH=1505
Length=1505
Score = 1954 bits (1058), Expect = 0.0
Identities = 1130/1166 (97%), Gaps = 0/1166 (0%)
Strand=Plus/Plus
Query 1 CCACCTCTAAGCACTTTCAAATGGAGAAGAAAGGCCAGTATGGTACATATGACTCATTGG 60
||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 130 CCACCTCTAAGCACTTTTAAATGGAGAAGAAAGGCCAGCATGGTACATATGAATCAATGA 189
Query 61 TGACTCATCATCCGATCCTCTGTATCATTGCTTTATCTGTAATTTTCATAGCAATCGACC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 190 TGACTCATCATCCGATCCTCTGTATCATTGCTTTATCTGTACTTTTCATAGCAATCGACC 249
Query 121 CCTTTCACATGAGTCCAATTGGGGGTCGTGAGTTCAAACCCGTGAAGCATGAGGTTGCTC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCTTTCACATGAGTCCAATCGGGGGTCGTGAGTTCAAACCCGTGAAGCATGAGGTTGCTC 309
Query 181 CATACAAGCAAGTTATGGAAAGCTGGCCAAGAGACAACCTTAGTCGACTGGGTAATCATG 240
|||| ||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 CATATAAGGAAGTCATGGGAAGCTGGCCTAGAGACAACCTTAGTCGACTGGGTAATCATG 369
Query 241 GGAAACTGGAGTTTGTGGACCAAGTCTTTGGTCCAGAGTCATTAGAGTTTGATAGTTTAG 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGAAACTGGAGTTCGTGGACCAAGTCTTTGGTCCAGAGTCATTAGAGTTTGATAGTTTAG 429
Query 301 GTCGTGGTCCATACACAGGGTTGGCTGATGGAAGAGTGGTTAGATGGATGGGTGAAGCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GTCGTGGTCCATACACAGGGTTGGCTGATGGAAGAGTGGTTAGATGGATGGGTGAAGCAA 489
Query 361 TTGGATGGGAGACATTTTCCGTGGTAACATCAAATTGGTCAGAGAAAGCTTGTGTGAGAG 420
| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 490 TCGGATGGGAGACATTTTCGGTGGTAACATCAAAATGGTCAGAGGAAGCTTGTGTGAGAG 549
Query 421 GTGTGGATTCAACAACAAACAAGCAATGGAAGCACGAGAAGCTGTGTGGGAGACCTCTTG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 550 GTGTGGATTCAACAACAAACAAGCAATGGAAGCACGAGAAGCTGTGTGGGAGGCCTCTTG 609
Query 481 GTCTGAGATTTCATAAAGAGACAGGAAATTTGTATATTGCAGACGCTTACTATGGTCTGC 540
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 GACTGAGATTTCATAAAGAGACAGGAAATTTGTATATTGCAGACGCTTACTATGGTCTAC 669
Query 541 TTGTGGTTGGTCCTGAAGGAGGGATCGCTACGCCTTTAGCTACTCATGTGGAAGGAAAGC 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 670 TTGTGGTTGGTCCTGAAGGAGGGATTGCTACGCCTTTAGCTACTCATGTGGAAGGAAAGC 729
Query 601 CTATACTATTTGCCAATGACCTTGACATCCATAGAAATGGCTCCATCTTCTTCACTGACA 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CTATACTCTTTGCCAATGACCTTGACATCCATAGAAATGGCTCCATCTTCTTCACTGACA 789
Query 661 CCAGCAAAAGATATGACAGAGCGAATCATTTCTTTATCTTACTGGAAGGAGAATCAACAG 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 790 CCAGCAAAAGATATGACAGAGCGAATCATTTCTTTATATTACTGGAAGGAGAATCAACAG 849
Query 721 GAAGGCTTCTAAGATATGACCCACCTACCAAAACAACACACATTGTGCTGGAGGGTTTGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GAAGGCTTCTAAGATATGACCCACCTACCAAAACAACACACATTGTGCTGGAGGGTTTGG 909
Query 781 CTTTTCCCAATGGAATTCAACTCTCTAAAGACCAATCTTTCCTTCTCTTCACCGAAACAA 840
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 910 CTTTTCCCAATGGAATTCAACTCTCTAAAGACCAATCTTTCCTCCTCTTCACCGAAACAA 969
Query 841 CCAATTGCAGATTGGTGAAATACTGGCTGGAGGGTCCAAAGACAGGTGAAGTCGAGGTGG 900
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 970 CCAATTGCAGATTGGTGAAGTACTGGCTGGAGGGTCCAAAGATGGGTGAAGTCGAGGTGG 1029
Query 901 TGGCAGATCTCCCGGGATTCCCAGACAATGTAAGAATAAACGAAAAGGGTCAGTTTTGGG 960
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1030 TGGCAGATCTCCCGGGATTCCCAGACAATGTAAGAATAAATGAAGAGGGTCAGTTTTGGG 1089
Query 961 TTGCAATAGACTGTTGCAGAACACCGGCACAAGAGGTTCTTACAAACAACCCTTGGATAA 1020
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTGCAATTGATTGTTGCAGAACACCGGCACAAGAGGTTCTTACAAACAACCCTTGGATAA 1149
Query 1021 AAAGCATCTACTTTCGGTTGCCAATACCGATGAAGCTGCTGGCGAAAACGATGGGGATGA 1080
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1150 GAAGCATCTACTTTCGGTTGCCAATACCGATGAAGCTGCTTGCGAAAACGATGGGGATGA 1209
Query 1081 GAATGTACACTGTGATATCGAGATTCGACGAGGAAGGTAAGGTCTTGGAGGTGCTTGAGG 1140
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1210 GAATGTACACTGTGATATCGAGATTCGACGAGGAAGGTAAAGTCCTGGAGGTGCTCGAGG 1269
Query 1141 ATAGACAAGGGAAGGTAATGAAGCTT 1166
||||||||||||||||||||||||||
Sbjct 1270 ATAGACAAGGGAAGGTAATGAAGCTT 1295
Score = 124 bits (67), Expect = 2e-27
Identities = 85/93 (91%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 1193 GAAGCTTTGGATTGGAACAGTGGCTCATAACCACATTGCCACTTTACCTTATCCTTTGGC 1252
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1289 GAAGCTTTGGATTGGAACAGTGGCTCATAACCACATTGCCACTCTACCTTATCCTTTGAC 1348
Query 1253 ---GAATCAATGAAGAACCTTTGCTGTGTAGTT 1282
|||||||||||| || |||| |||||||||
Sbjct 1349 AATGAATCAATGAAGGAC-TTTGTTGTGTAGTT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5