BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938971
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18025247-180312... 1127 0.0
> AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18025247-18031243
REVERSE LENGTH=3312
Length=3312
Score = 1127 bits (610), Expect = 0.0
Identities = 1412/1788 (79%), Gaps = 100/1788 (6%)
Strand=Plus/Plus
Query 61 TTT-CAATCGAACAATCTCTGGGTCGGTAGTTTGACAACC-GATACTACAGAATCCGATC 118
||| || || |||||||| ||||||||||| | || || || || ||||| || ||||
Sbjct 296 TTTCCAGTCAAACAATCTTTGGGTCGGTAGCCTAAC-GCCGGAGACGACAGAGTCAGATC 354
Query 119 TAG-CCGATTTGTTTGGAAGATTTGGTGAAATTGATAGAATCACGGCGTTTTCTTCCCGT 177
| | |||| ||||||||||||| || || |||||||||||||||| || |||||| ||
Sbjct 355 T-GACCGAGTTGTTTGGAAGATACGGCGATATTGATAGAATCACGGTGTATTCTTCACG- 412
Query 178 A-GCTTCGCGTTTATCTACTACAGACGTGTTGAAGAAGCTGTGGCGGCGAAAGAGGCGCT 236
| |||| |||||||| |||||||||| ||| || ||||| || || || |||||||| ||
Sbjct 413 AGGCTTTGCGTTTATATACTACAGACATGTGGAGGAAGCAGTCGCAGCCAAAGAGGCTCT 472
Query 237 TCAAGGTGCTGATTTGAATGGGAGTCAGATTAAGATCGAATTCGCTCGACCGGCAAAACC 296
|||||| || |||||||||| ||||| ||||||||||||| ||| ||||||||||||||
Sbjct 473 TCAAGGAGCAAATTTGAATGGAAGTCAAATTAAGATCGAATACGCACGACCGGCAAAACC 532
Query 297 TTGTAAGAGTCTTTGGGTGGGTGGAATCAGCCCGAGTGTTTCAAAGGATGACCTGGAGGC 356
|||||||||||| ||||||||||||||| |||| | ||| || ||||||||||||||||
Sbjct 533 TTGTAAGAGTCTATGGGTGGGTGGAATCGGCCCTAATGTCTCCAAGGATGACCTGGAGGA 592
Query 357 AGAGTTCAGGAACTTTGGCAAAATCGAAGATTTCAGGTTTCTTAGGGAACGCAAGACGGC 416
||||||||| || ||||| |||||||| ||||| |||||||| || ||||||||||| ||
Sbjct 593 AGAGTTCAGCAAGTTTGGGAAAATCGAGGATTTTAGGTTTCTCAGAGAACGCAAGACAGC 652
Query 417 TTTTATTGACTT-TTATAACATGGAAGATGCTATAGC-GGCAAAGAACATGAACGGAAAG 474
||| ||||| || |||| | ||||| |||||| || | ||| |||| |||||| ||||||
Sbjct 653 TTTCATTGA-TTATTATGAGATGGATGATGCTTTA-CAGGCTAAGAGCATGAATGGAAAG 710
Query 475 AGAATGGGAAATAGCTATTTGCGAGTTGATTTTCTTCGGTCACAAGGGCCACAAAAAGAA 534
||||| ||||| |||||| ||||||||||| |||||||||| |||| ||||||||
Sbjct 711 CCTATGGGTGGTAGCTTTTTGCGTGTTGATTTTCTCCGGTCACAAGCGCCAAAAAAAGAA 770
Query 535 CCATGGCCTGGCTCTAATGATGGCAGGGATGGCAGTTTGAGTAC-TAAACAACAGTATCC 593
| |||| |||||||| | ||| ||| |||||| | ||| | | ||||| ||||||||
Sbjct 771 CAATGGGCTGGCTCTTACGATAACAGAAATGGCAATATGAAT-CATAAACCGCAGTATCC 829
Query 594 TCACTCAT-TCGGAGA-TGCTGAAGGAGAACG-CCGA-CCAAGTAATGTACTGAGGATTG 649
|||||||| | | ||| | | |||||| | | || | |||||||| || ||| ||||||
Sbjct 830 TCACTCATAT-GAAGACT-TTAAAGGAG-ATGTCC-AGCCAAGTAAGGTTCTGTGGATTG 885
Query 650 GATACCCTCCTTCTG-T--TC-A-G-ATTGACGAGCAAACACTACACAATTG-TATGATA 702
| | ||||||| ||| | | | | | ||| ||||||| || ||||| || ||||||
Sbjct 886 GGTTCCCTCCTACTGCTACACAATGCAATGATGAGCAAATTCTGCACAA-TGCGATGATA 944
Query 703 CTCTTTGGTGAGATTGAGAGATGT-AATAGTTACCCATCAAGGCATTTCT-CACTTGTGG 760
|||||||||||||| ||||| || || ||||||||||||||| |||| | |||||||||
Sbjct 945 CTCTTTGGTGAGATCGAGAG-GGTAAAAAGTTACCCATCAAGGAATTT-TGCACTTGTGG 1002
Query 761 AATTTAGAAGCATTGAGGAAGCTCG-TTGTGCTAAGGAAGGACTACATGGAAGGTTACTC 819
| ||||| ||| ||||||||||| ||| |||||||| ||||| || |||||| ||
Sbjct 1003 AGTTTAGGAGCGCGGAGGAAGCTCGCCAATGC-AAGGAAGGCCTACAGGGGAGGTTATTC 1061
Query 820 AATGATCCAAGAATCACAATAATGTACTCGAATGATGACATT-CCCCCTGGACGAGGAGA 878
||| |||| ||||||| ||| |||||||| || ||||| || || ||| || | |||
Sbjct 1062 AATAATCCTAGAATCAAAATTATGTACTCAAACGATGA-GTTGCCTCCT-GA-G-CAAGA 1117
Query 879 TGATACCAGTTTTTATTCTGGTGCCAAACGATCAAGGCCTGAGATGTTC-GTCAATGATC 937
||||| |||||||| |||||| ||||| |||||| | || |||||| | |||||||
Sbjct 1118 CGATACTAGTTTTTACTCTGGTATGAAACGGTCAAGGACAGATATGTTCAAT-AATGATC 1176
Query 938 CTCCATTCATCTCGTCACCGCATTCTAGTGGGTTTTTTGGCTCTATGAGGCCCTTTC-GA 996
|| |||| | || || || ||||||| ||| || ||| |||||||||||| || ||
Sbjct 1177 CTTCATTTGTATCTTCTCCTCATTCTACTGGAATTCCTGGGTCTATGAGGCCC-CTCAGA 1235
Query 997 GGAAGC-GTTGAACGTTCACATAGTGGTCCAGAATATAGCGATGTGGTTGGTACAGAAG- 1054
|| | | ||| |||||| ||| |||| ||||||| | || || ||||||| || ||
Sbjct 1236 GGTA-CAAATGAGCGTTCATATAATGGTGCAGAATACAATGACGTTGTTGGTA-AGGAGC 1293
Query 1055 -AAAGCTGGGGGAGGCCATCTCCAACT-GAAGCTGGAA-A-----A--T----------C 1094
||| |||| ||||||||||| ||| | ||| |||||| | | | |
Sbjct 1294 CAAA-CTGGAGGAGGCCATCTGCAAATGGAA-CTGGAATACTCCCATCTCCAACAGGACC 1351
Query 1095 TGGAATACTCCCGTCTCCTGCACCACATACAATGCTACCTGTTAGGTCAAACCGTGGTTC 1154
|||||| ||||| |||||||||| | ||| | || ||| | |||||||||| | |||
Sbjct 1352 TGGAATCCTCCCATCTCCTGCACAAGGTACGAGGCGCCCTATGAGGTCAAACCCCGATTC 1411
Query 1155 TTGGGAAGGATATGATCCTGCTCAGTTGGAT-AGAGAACCCAAAAGAACCCGTAGAGATG 1213
||||||||||||||||||||||||||||| | |||||| ||| ||||| | |||||||
Sbjct 1412 TTGGGAAGGATATGATCCTGCTCAGTTGG-TCAGAGAAAGTAAACGAACCAGAAGAGATG 1470
Query 1214 GATCAGTGGATGTTTTTCCTTCAATGAGTGTAGATGACCGTGTCACTGGGTTTGACAGGA 1273
|||||||||| | |||| || ||||| |||| ||||| | |||| | || | |
Sbjct 1471 GATCAGTGGACGGTTTTACTCCAATGGGTGTCGATGAGAG-GTCA-T---TT-G---G-- 1519
Query 1274 CATACGGGCGTGGGTCAGTTGCAGCCAGGTCCGG-CCGTGGTTTCCCTGATACTGATTTC 1332
| || | || |||||||| || || || |||||| ||||||| ||||| |
Sbjct 1520 --T-CGAG-GT---TCAGTTGCTGCTAGA-CCTATCCGTGGCCCCCCTGATTCTGATCAC 1571
Query 1333 ATTTGGAGAGGAATCATTGCCAAAGGTGGAACTACTATTTGTCGTGCTCGTTGTGTACCT 1392
|| ||||||||||| |||||||| ||||||||| | | ||| |||||||||||||||||
Sbjct 1572 ATATGGAGAGGAATGATTGCCAAGGGTGGAACTCCCGTCTGTTGTGCTCGTTGTGTACCT 1631
Query 1393 TTCGGAAAGGGGACTGAAACTGAACTCCCTGAGATCGTCAATTGTTCAGCAAGAACGGGT 1452
| |||||||||| ||||||| |||| |||||| |||||||||||||||||||||| | |
Sbjct 1632 ATGGGAAAGGGGATTGAAACTAAACTGCCTGAGGTCGTCAATTGTTCAGCAAGAACTGAT 1691
Query 1453 TTGGATATGCTTGCCAAACATTACACCGAAGCCATTGGATTTGAAATCGTTTTCTTCTTA 1512
||| ||||||| || ||||||||| ||| |||||||||| ||| |||||||| ||| ||
Sbjct 1692 TTGAATATGCTCGCTAAACATTACGCCGTTGCCATTGGATGTGAGATCGTTTTTTTCGTA 1751
Query 1513 CCAGACAGGGAAGACGATTTCGCGTCTTATACTGAATTCCTCTGCTACCTTGGTTCAAAA 1572
|||||||||||||| ||||| |||||||| |||||||| ||| | |||||| | ||||||
Sbjct 1752 CCAGACAGGGAAGAAGATTTTGCGTCTTACACTGAATTTCTCCGGTACCTTAGCTCAAAA 1811
Query 1573 AATCGAGCAGGTGTGGCCAAATTAGACGATGGAACCACTTTATTTTTGGTTCCTCCATCA 1632
|||| || ||||| ||||||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 1812 GATCGGGCGGGTGTTGCCAAATTAGATGATGGTACAACTTTATTCTTGGTGCCTCCATCA 1871
Query 1633 GATTTCTTAACTGATGTGCTCAAAGTGTCGGGTCCAGAACGGTTATATGGTGTTGTTCTC 1692
||||||||||||||||| ||| ||||| | ||| ||||||| |||||||||||||||||
Sbjct 1872 GATTTCTTAACTGATGTACTCCAAGTGACCCGTCAAGAACGGCTATATGGTGTTGTTCTC 1931
Query 1693 AAGTTGCCCCCACCA-CAGGTTCCTGCCGCAGCATCGTATAAACAAGAACCTTA-TCCCA 1750
||||| ||||| ||| | | |||||| ||||||| || | ||||||| || | ||| |
Sbjct 1932 AAGTTACCCCCGCCAGCCG-TTCCTGTTACAGCATCATACAGACAAGAATCTCAGTCCAA 1990
Query 1751 TTCCTCAATC-TTATATGGGTCAATCTCGGAGTTTG-CCTGCCAATGC 1796
| |||| | |||||||| |||| | ||| | || |||||||||||
Sbjct 1991 T-CCTCTG-CATTATATGGATCAAGCCCGG-GATTCACCTGCCAATGC 2035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137206589105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5