BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938977
Length=407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59590.1 | Symbols: | jacalin lectin family protein | chr3:... 372 2e-102
> AT3G59590.1 | Symbols: | jacalin lectin family protein | chr3:22014167-22015768
FORWARD LENGTH=1365
Length=1365
Score = 372 bits (201), Expect = 2e-102
Identities = 254/280 (91%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 109 ATTATGATCGCTGGAGGCGACTACATCGAAGCTGTCGAGGGGACCTACACTGAAAGCCAT 168
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1087 ATTATGATCGCTGGAGGCGACTACATTGAAGCCGTCGAGGGGACCTACACTGAAAGCCAT 1146
Query 169 ATCACCTCCATCACATTTCGGATGTACAAGGGAGGCATGATGCCACAGTACGGACGCTTG 228
||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1147 ATCACCTCCATTACATTTCGGATGCGCAAGGGAGACATGATGCCACAGTACGGACGCTTG 1206
Query 229 AACGGGATGCCCTTCTCGCTTCGAGGAGAACGAGGCGAGAAGGTCATCGGGTTTTACGGA 288
||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1207 AACGGGACGCCCTTCTCGCTTCGAGGAGAACGAGGCTCCAAGGCCATCGGGTTTTACGGA 1266
Query 289 AGAAGCTCTGATGTCCACCTCACTGCTCTCGGCGTCCACTTCTCTGcc-cccccTCTAGC 347
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1267 AGAAGCTCTGGTGTCCACCTCACTGCTCTCGGCGTCCACTTCTCT-CCACCCCCTCTATA 1325
Query 348 TTTTTCATTTCGTAATAAGTCACCAATATTTAAGTACTAA 387
|| ||| |||| ||| | |||||| | ||||| || |||
Sbjct 1326 TTATTCGTTTCCTAACCATTCACCAGTTTTTAATTATTAA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19252547867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5