BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938989
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59650.2 | Symbols: | mitochondrial ribosomal protein L51/S... 200 5e-51
> AT3G59650.2 | Symbols: | mitochondrial ribosomal protein L51/S25/CI-B8
family protein | chr3:22033129-22034149 FORWARD LENGTH=749
Length=749
Score = 200 bits (108), Expect = 5e-51
Identities = 118/123 (96%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 126 GGAATAGAAATGAAAGGGTGGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTCTGA 185
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 356 GGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGA 415
Query 186 ATGCAACAAGGCTGAGGAACTCGCTTGGAAGGAAAGTGGTGAAACTGAGGACCAGACATG 245
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 416 ATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATG 475
Query 246 TCA 248
|||
Sbjct 476 TCA 478
Score = 195 bits (105), Expect = 3e-49
Identities = 109/111 (98%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 16 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGT 224
Query 76 GGTTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 126
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AATTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12768008246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5