BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939000
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59700.1 | Symbols: ATHLECRK, LECRK1, HLECRK | lectin-recept... 732 0.0
AT3G59750.1 | Symbols: | Concanavalin A-like lectin protein ki... 719 0.0
AT3G59740.1 | Symbols: | Concanavalin A-like lectin protein ki... 693 0.0
AT3G59730.1 | Symbols: | Concanavalin A-like lectin protein ki... 411 8e-114
> AT3G59700.1 | Symbols: ATHLECRK, LECRK1, HLECRK | lectin-receptor
kinase | chr3:22052133-22054275 FORWARD LENGTH=2143
Length=2143
Score = 732 bits (396), Expect = 0.0
Identities = 525/587 (89%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 284 AGAAAGGCTGACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 343
|||| |||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 1303 AGAACGGCTTACTTGGGAACAACGTTTCAGGATCATCAAAGATGTTGCAACTGCTCTACT 1362
Query 344 GCACCTGCATCAAGAATGGGCACAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 403
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||
Sbjct 1363 ACACCTGCATCAAGAATGGGTACAAGTCATCATTCATCGAGATATCAAACCAGCTAATGT 1422
Query 404 TCTCATCGACCACGATATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATGA 463
| | |||||| | || ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1423 TTTAATCGACAATGAAATGAATGCGAGGCTCGGGGATTTCGGACTGGCGAAACTGTATGA 1482
Query 464 TCAGGGATTTGATCCTCAGACATCGAGAGTAGCGGGAACATTAGGGTATATCGCACCAGA 523
||||||||| |||||| | ||||| | ||||||||||||||| || ||||||||||||||
Sbjct 1483 TCAGGGATTCGATCCTGAAACATCTAAAGTAGCGGGAACATTCGGATATATCGCACCAGA 1542
Query 524 GTTTATTAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCATTTGGGTTGGTAAT 583
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1543 GTTTCTAAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCCTTTGGGTTGGTAAT 1602
Query 584 GCTTGAAATAGTTTGTGGTAGAAGGTTGATAGACCGACGTGCAG-AGGAAAATGAAGAAG 642
||||||| |||| |||||||||||| | || || ||||||||| | ||||||||||||
Sbjct 1603 GCTTGAAGTAGTGTGTGGTAGAAGGATAATTGAGAGACGTGCAGCA-GAAAATGAAGAA- 1660
Query 643 TA-CTTGTGGATTGGATCTTAGAGCTTTGGGAACATGGGAACATTTTCGATGCGGCAGAG 701
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 1661 TATCTTGTGGATTGGATCTTAGAGCTTTGGGAAAATGGGAAAATTTTCGATGCAGCAGAG 1720
Query 702 GAAAGTACACGTCAAGAACAAAACAGGGGAGA-GATTGAGCTGGTTTTGAAGCTAGGGGT 760
||||||| |||||||||||||||||||||| | | ||||||| |||||||||||||| ||
Sbjct 1721 GAAAGTATACGTCAAGAACAAAACAGGGGACAAG-TTGAGCTTGTTTTGAAGCTAGGTGT 1779
Query 761 GTTGTGTGCGCATCAATCTGAATCAATAAGACCGGATATGAGTGTGGGTTATGCTGATCT 820
||||||| |||||||| ||| ||| |||||||||| ||||||||||| | ||| ||| |
Sbjct 1780 GTTGTGTTCGCATCAAGCTGCATCGATAAGACCGGCTATGAGTGTGG-TAATGAGGATTT 1838
Query 821 TGAATGGTGTTGTG-CAGCTTCCAGATAATCTTCTTGATGTAGTAAG 866
||||||| ||| | ||||| |||||||||||||||||||| |||||
Sbjct 1839 TGAATGGAGTT-TCACAGCTACCAGATAATCTTCTTGATGTTGTAAG 1884
Score = 248 bits (134), Expect = 6e-65
Identities = 145/150 (97%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 137 GATCGGTTTCGTCTTTTATTGGAGGCACAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGA 196
||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 907 GATCGGTTTCGTCTTCTATTTGAGGCATAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGA 966
Query 197 GATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTT 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTT 1026
Query 257 CAAGGAGAAACAACTTCTTGG-AAGAGGAG 285
||||||||||||||||||||| || |||||
Sbjct 1027 CAAGGAGAAACAACTTCTTGGTAA-AGGAG 1055
> AT3G59750.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:22069855-22071821 REVERSE LENGTH=1881
Length=1881
Score = 719 bits (389), Expect = 0.0
Identities = 526/591 (89%), Gaps = 13/591 (2%)
Strand=Plus/Plus
Query 284 AGAAAGGCTGACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 343
|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1185 AGAACGGCTCACTTGGGAACAACGTTTCAAGATCATCAAAGATGTTGCATCTGCTCTACT 1244
Query 344 GCACCTGCATCAAGAATGGGCACAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 403
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 1245 ACACCTGCATCAAGAATGGGTACAAATCATCATTCATAGAGATATCAAACCAGCTAATGT 1304
Query 404 TCTCATCGACCACGATATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATGA 463
|| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1305 CCTAATCGACCACGAAATGAATGCAAGGATCGGGGATTTCGGATTGGCAAAGCTGTATGA 1364
Query 464 TCAGGGATTTGATCCTCAGACATCGAGAGTAGCGGGAACATTAGGGTATATCGCACCAGA 523
||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1365 TCAGGGACTTGACCCTCAGACATCTAGAGTAGCGGGAACATTTGGTTATATCGCACCTGA 1424
Query 524 GTTTATTAGAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCATTTGGGTTGGTAAT 583
| | | |||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1425 GCTCCTAAGAACAGGAAGAGCGACCACAAGCACTGATGTTTATGCCTTTGGGTTGGTAAT 1484
Query 584 GCTTGAAATAGTTTGTGGTAGAAGGTTGATAGACCGACGTGCAGAGGAAAATGAAGAAGT 643
||||||| | |||||||||||||| |||| || ||||||||| |||||||||||||||
Sbjct 1485 GCTTGAAGTTGTTTGTGGTAGAAGAATGATTGAGCGACGTGCACCGGAAAATGAAGAAGT 1544
Query 644 ACTTGTGGATTGGATCTTAGAGCTTTGGGAACA-TGGGAA-CATTTTCGATGCGGCAGAG 701
|||||||||||||||||||||||||||||| | |||||| | |||||||||| || |||
Sbjct 1545 TCTTGTGGATTGGATCTTAGAGCTTTGGGAA-AGTGGGAAAC-TTTTCGATGCAGCTGAG 1602
Query 702 GAAAGTA-CACGTCAAGAACAAAACAGGGGAGAGATTGAGCTGGTTTTGAAGCTAGGGGT 760
||||||| | ||||||||||||||||||||||| || ||||| ||||||||||||| |
Sbjct 1603 GAAAGTATC-CGTCAAGAACAAAACAGGGGAGAAATCGAGCTTCTTTTGAAGCTAGGTCT 1661
Query 761 GTTGTGTGCGCATCA-ATCTGAA-TCAATAAGACCGGATATGAGTGTGGGTTATGCTGAT 818
||||||||| ||||| | ||||| | | || ||||| | ||||||| || |||||| |||
Sbjct 1662 GTTGTGTGCACATCACA-CTGAACTGATTA-GACCGAACATGAGTGCGG-TTATGCAGAT 1718
Query 819 CTTGAATGGTGTTGT-GCAGCTTCCAGATAATCTTCTTGATGTAGTAAGAG 868
||||||||| ||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1719 CTTGAATGGCGTT-TCGCAGCTTCCAGATAATCTTCTTGATGTCGTAAGAG 1768
Score = 207 bits (112), Expect = 1e-52
Identities = 136/148 (92%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 138 ATCGGTTTCGTCTTTTATTGGAGGCACAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGAG 197
||| |||| ||||| ||| |||||| ||||||||||| ||||||||||| |||||||||
Sbjct 790 ATCTGTTTTGTCTTCTATACGAGGCATAAGAAGGTTAAGGAGGTTCTTGAGGAATGGGAG 849
Query 198 ATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTC 257
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 850 ATTCAATATGGACCTCATAGGTTTGCCTATAAGGAGCTTCTCAATGCCACAAAGGATTTC 909
Query 258 AAGGAGAAACAACTTCTTGGAAGAGGAG 285
|||||||||||||||||||||| |||||
Sbjct 910 AAGGAGAAACAACTTCTTGGAAAAGGAG 937
Score = 139 bits (75), Expect = 4e-32
Identities = 95/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 2 ACAGTCCGGTTCACCCGGCATGTCTTCCGGCATCTCTCCTACGGTAGGCCTTTCAGGAGC 61
|||||||||||||| |||||||||| || ||||||||||| | ||||||| |||||||
Sbjct 246 ACAGTCCGGTTCACATGGCATGTCTTTCGTTATCTCTCCTACAGCAGGCCTTCCAGGAGC 305
Query 62 TTCCTCAGATCAGTACCTCGGATTATTCAATGAAACAAGCAACGG 106
|||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 306 TTCCTCCGATCAGTACCTCGGATTATTCAATGAAACAACCAACGG 350
> AT3G59740.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:22066987-22069058 REVERSE LENGTH=2072
Length=2072
Score = 693 bits (375), Expect = 0.0
Identities = 518/585 (89%), Gaps = 17/585 (3%)
Strand=Plus/Plus
Query 284 AGAAAGGCTGACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 343
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1284 AGAACGGCTTACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCAACTGCTCTACT 1343
Query 344 GCACCTGCATCAAGAATGGGCACAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 403
||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1344 ACACCTGCATCAAGAATGGGTACAAGTCATCGTTCATCGAGATATAAAACCGGCTAATGT 1403
Query 404 TCTCA-TCGACCACGATATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATG 462
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TCT-ACTCGACCACGGCATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATG 1462
Query 463 ATCAGGGATTTGATCCTCAGACATCGAGAGTAGCGGGAACATTAGGGTATATCGCACCAG 522
||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1463 ATCAGGGATTTGATCCTCAGACATCTAGAGTAGCGGGAACATTAGGTTATATTGCACCTG 1522
Query 523 AGTTTATTA-GAACAGGAAGAGCAACCACAAGCACTGATGTTTACGCATTTGGGTTGGTA 581
|| | ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1523 AGCTC-TTAAGAACAGGAAGAGCAACCACAAGCACAGATGTTTACGCCTTTGGGTTGGTT 1581
Query 582 ATGCTTGAAATAGTTTGTGGTAGAAGGTTGATAGACCGACGTGCAG-AGGAAAATGAAGA 640
||||||||| | |||||||||||||| ||||| || ||||||||| || |||||||||
Sbjct 1582 ATGCTTGAAGTCGTTTGTGGTAGAAGATTGATTGAGAGACGTGCAGCAG-AAAATGAAGC 1640
Query 641 AGTACTTGTGGATTGGATCTTAGAGCTTTGGGAACA-TGGGAA-CATTTTCGATGCGGCA 698
|| ||||| |||||||| ||||||||||||||| | |||||| | |||||||||| ||
Sbjct 1641 GGTTCTTGTTGATTGGATTTTAGAGCTTTGGGAA-AGTGGGAAAC-TTTTCGATGCAGCT 1698
Query 699 GAGGAAAGTACACGTCAAGAACAAAACAGGGGAGAGATTGAGCTGGTTTTGAAGCTAGGG 758
|||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1699 GAGGAAAGTATTCGTCAAGAACAAAACAGAGGAGAAATTGAGCTTGTTTTGAAGCTAGGT 1758
Query 759 GTGTTGTGTGCGCATCA-ATCTGAATCAATAAGACCGGATATGAGTGTGGGTTATGCTGA 817
|||||||||| ||||| | |||||| || |||||| | ||||||| || || ||| ||
Sbjct 1759 CTGTTGTGTGCACATCACA-CTGAATTGATTAGACCGAACATGAGTGCGGTTT-TGCAGA 1816
Query 818 TCTTGAATGGTGTTGT-GCAGCTTCC-AGATAATCTTCTTGATGT 860
|||||||||| ||| | ||| ||||| | ||||||||||||||||
Sbjct 1817 TCTTGAATGGCGTT-TCGCATCTTCCCA-ATAATCTTCTTGATGT 1859
Score = 207 bits (112), Expect = 1e-52
Identities = 137/148 (93%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 141 GGTTTCGTCTTTTATTG-GAGGCACAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGAGAT 199
||||| |||||||| || |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 883 GGTTTTGTCTTTTA-TGTGAGGCATAAGAAGGTTAAGGAGGTTCTTGAAGAATGGGAGAT 941
Query 200 TCA-ATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTCA 258
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 942 TCAGA-ATGGACCTCATAGGTTTTCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTCA 1000
Query 259 AGGAGAAACAACTTCTTGG-AAGAGGAG 285
| ||||||||||||||||| || |||||
Sbjct 1001 AAGAGAAACAACTTCTTGGGAA-AGGAG 1027
> AT3G59730.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:22064308-22065879 REVERSE LENGTH=1572
Length=1572
Score = 411 bits (222), Expect = 8e-114
Identities = 248/261 (95%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 284 AGAAAGGCTGACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 343
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AGAACGGCTCACTTGGGAACAACGTTTCAAGATCATCAAAGACGTTGCATCTGCTCTACT 1349
Query 344 GCACCTGCATCAAGAATGGGCACAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 403
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CCACCTGCATCAAGAATGGGTTCAAGTCATCATTCATAGAGATATCAAACCGGCTAATGT 1409
Query 404 TCTCATCGACCACGATATGAATGCGAGGCTCGGGGATTTCGGATTGGCGAAGCTGTATGA 463
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1410 TCTAATCGACCACGACATGAATGCGAGGCTCGGGGATTTCGGACTGGCGAAGCTGTATGA 1469
Query 464 TCAGGGATTTGATCCTCAGACATCGAGAGTAGCGGGAACATTAGGGTATATCGCACCAGA 523
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1470 TCAGGGATTTGATCCTCAGACATCGAGAGTTGCAGGAACATTCGGGTATATCGCACCAGA 1529
Query 524 GTTTATTAGAACAGGAAGAGC 544
|||| | ||||||||||||||
Sbjct 1530 GTTTCTAAGAACAGGAAGAGC 1550
Score = 219 bits (118), Expect = 5e-56
Identities = 139/149 (93%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 138 ATCGGTTTCGTCTTTTATTGGAGGCACAAGAAGGTTAAAGAGGTTCTTGAAGAATGGGAG 197
|||||||||||||| |||| |||||| ||||||||||| ||||||||||| |||||||||
Sbjct 886 ATCGGTTTCGTCTTCTATTTGAGGCATAAGAAGGTTAAGGAGGTTCTTGAGGAATGGGAG 945
Query 198 ATTCAATATGGACCTCATAGGTTTGCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTC 257
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 946 ATTCAATGTGGACCTCATAGGTTTTCTTATAAGGAGCTTTTCAATGCCACAAAGGGTTTC 1005
Query 258 AAGGAGAAACAACTTCTTGG-AAGAGGAG 285
|| ||||||||||||||||| || |||||
Sbjct 1006 AAAGAGAAACAACTTCTTGGGAA-AGGAG 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5