BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939010
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57940.1 | Symbols: | Domain of unknown function (DUF1726) ... 593 1e-168
> AT3G57940.1 | Symbols: | Domain of unknown function (DUF1726)
;Putative ATPase (DUF699) | chr3:21449298-21455961 FORWARD
LENGTH=3476
Length=3476
Score = 593 bits (321), Expect = 1e-168
Identities = 431/478 (90%), Gaps = 32/478 (7%)
Strand=Plus/Plus
Query 717 GGAAAGATATCTGAGAACTCAGCCCTTCAAAGTTTAAGGGATGGCCATTCACCATATGGA 776
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1973 GGAAAGATATCTGAGAACTCTGCCCTTCAAAGTTTAAGGGATGGCCATTCACCATACGGA 2032
Query 777 GACCAAATTCCATGGAAATTCTGTGAACAATTCCGGGATACTGAATTTCCAGGTTTCTCT 836
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2033 GACCAAATTCCATGGAAATTCTGTGAACAATTCCGGGACACTGAATTTCCAGGTTTCTCT 2092
Query 837 GGGGCTCGGATAGTTCGCATAGCAGTCTACCCTTACGCCATGAAGATGGGATATGGTTCT 896
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2093 GGTGCTCGGATAGTTCGCATAGCAGTCCACCCTAACGCCATGAAGATGGGATATGGTTCT 2152
Query 897 GCTGCAGTTGAACTCTTGAGCAGATATTTTGAGGGTCAGATAGCTCCAATCTCAGAAGCT 956
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 GCTGCAGTTGAACTCTTGACCAGATATTTTGAGGGTCAGATAGCTCCAATCTCAGAAGCT 2212
Query 957 GATGATAAAGTTGATGTGGAGCATGCACCCATTAAAGTCG-CAGAGGCTGCGGAGAAGGT 1015
|| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct 2213 GAAGATAAAGTTGATGTGGAGCATGCACCCATTAAAGT-GACTGAGGCTGCTGAGAAGGT 2271
Query 1016 CTCCATGCTCGAGGAGCAAGTAAAGCCTCGCACAAATCTTC----TC-AT-G-----A-T 1063
|||||||||||||||||||||||||||||| |||||||||| || || | | |
Sbjct 2272 CTCCATGCTCGAGGAGCAAGTAAAGCCTCGTACAAATCTTCCACCTCTATTGGTTCCACT 2331
Query 1064 C---GA-CTAC--C-TGATAAGCTCCACTACATTGGTGTTTCCTTTGG----AC------ 1106
| || | || | ||| ||||||||||||||||||||||||||||| ||
Sbjct 2332 CCATGATCGACGACCTGAGAAGCTCCACTACATTGGTGTTTCCTTTGGGCTTACTTTGGA 2391
Query 1107 C-TCTTCCGATTTTGGAGAAAACATAATTTTGCGCCATTCTACGTTAGCCAAATCCCA 1163
| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2392 CCTCTTCAGATTTTGGAGAAAACACAATTTTGCGCCATTCTACGTTAGCCAAATCCCA 2449
Score = 411 bits (222), Expect = 2e-113
Identities = 282/310 (91%), Gaps = 7/310 (2%)
Strand=Plus/Plus
Query 1476 AATGGAGTTGCGGGAAAGGAGATCGAATCAGCCCTCCCTCGTTTGAAAGAGAGAGAGCTT 1535
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 2981 AATGGAGTTGCGGGAAAGGAAATCAAATCAGCTCTCCCTCGTTTGAAAGAGAGAGAGCTT 3040
Query 1536 GAACCG--GGCAATGTATCGGTCGACTATGGTATCAGGGAAGGAGCAACACAAGTCGAGG 1593
|||| ||||||||| |||||| ||| ||||||||||||||||| |||||||||||
Sbjct 3041 --ACCGCTCACAATGTATCAGTCGACGATGATATCAGGGAAGGAGCAAAACAAGTCGAGG 3098
Query 1594 AACAAATGATGAAGGAGAAGGTTGAAGGATTAATGGATTCTGAGCTTCAACAATATGTAA 1653
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3099 AACAAATGAAGAAGGAGAAGATTGAAGGATTAATGGATTCTGAGCTTCAACAATATGTAA 3158
Query 1654 CAGGGGACAAAGAAGCAGAGGCTCTGCAACATTCAAAGATCCCTTCAAGTGGTATTATCA 1713
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3159 TTGGGGATAAAGAAGCAGAGGCTCTGCAACATTCAAAGATCTCTTCAAGTGGTATTATCA 3218
Query 1714 GTGTGTTAAGTCCACTGAATCGGAGAATGAGAATGGGTTTTGACAAATCCACTAAAAAGA 1773
|||| | ||||| || |||| ||||||||||| |||||| ||||||||||| |||||||
Sbjct 3219 GTGT-T-AAGTCTACCAAATCAGAGAATGAGAACGGGTTT-GACAAATCCACCAAAAAGA 3275
Query 1774 GAAGCAGTGA 1783
||||||||||
Sbjct 3276 GAAGCAGTGA 3285
Score = 213 bits (115), Expect = 5e-54
Identities = 126/131 (96%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 1197 ATGGACTATAAACTTGCAATGAGTGTCTTAAACCCCAACATCAACTTC-CACGAGGTTGA 1255
|||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 2606 ATGGACTATAAACTTGCAATGAGTGTCTTAAACCCCAAGATCAACTTCGC-CGAGGTTGA 2664
Query 1256 TTCTTCAGGGAGTTCATCAGGTGGATTTTTGAAGAGACTCGACGGCATATTATCTCCGTA 1315
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2665 TTCTTCAGGGAGTTCATCAGGTGGATTTTTGAAGACACTCAACGGCATATTATCTCCGTA 2724
Query 1316 TGATATGGAGA 1326
|||||||||||
Sbjct 2725 TGATATGGAGA 2735
Score = 206 bits (111), Expect = 8e-52
Identities = 123/129 (95%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1328 GTTTATGACATCTGCAAAACGCTGGCACATCAGTATTTTGAAGAGAAGCTCCCCATATGA 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2777 GTTTATGACATCTGCAAAACGCTGGCACATCAGTATTTTGAAGAGAAGCTCCCCGTATCA 2836
Query 1388 CTGTCATATGTTCAGGCATCTATATTGCTATGCTTGGGGTTGCAGGAGGCGGACTTCTCT 1447
|||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 2837 CTGTCATATGTTCAAGCATCTATATTGCTATGCTTGGGGTTGCAGGAGACGGATTTCTCC 2896
Query 1448 AGCATCGAG 1456
|||||||||
Sbjct 2897 AGCATCGAG 2905
Score = 187 bits (101), Expect = 3e-46
Identities = 134/149 (90%), Gaps = 5/149 (3%)
Strand=Plus/Plus
Query 366 CAGTATATACAACCACAGGAGCATGAGAAGCTCTCACAAGTAGAGCTGTTGGTTATTGAT 425
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1364 CAGTATATACAACCACACGAACATGAGAAGCTTTCACAAGTAGAGCTGTTGGTTATTGAT 1423
Query 426 GAAGC-GTCAGCTATTTCTTTGCCAGTTGTGGTGAAGTCTTTGCTAGGTCCTTATCTGGT 484
||||| | |||||||| |||| ||||||||| ||||||||||| ||||||||||| ||
Sbjct 1424 GAAGCAG-CAGCTATTCCTTTACCAGTTGTG---AAGTCTTTGCTTGGTCCTTATCTAGT 1479
Query 485 TTTCCTATCGTCAACTGTCAGCGGGTATG 513
||||||||| ||||||||||| || ||||
Sbjct 1480 TTTCCTATCCTCAACTGTCAGTGGCTATG 1508
Score = 154 bits (83), Expect = 3e-36
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 619 GCTATGAAGGCACTGGGAGATCTTTGTCCCTGAAATTCCTCCAACAATTAGATGAGCAAA 678
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1503 GCTATGAAGGCACTGGGAGATCTTTGTCCCTGAAACTCCTCCAACAATTAGATGAGCAAA 1562
Query 679 GCCGGGCTCCTGCTACTGGTCTTGAAGGGTCT 710
| |||||||||||||||||||||||||| |||
Sbjct 1563 GTCGGGCTCCTGCTACTGGTCTTGAAGGCTCT 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5