BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939011

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57780.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   335    2e-91


> AT3G57780.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: nucleolar protein gar2-related (TAIR:AT2G42320.2); 
Has 3163 Blast hits to 2460 proteins in 357 species: Archae 
- 16; Bacteria - 291; Metazoa - 841; Fungi - 335; Plants - 248; 
Viruses - 72; Other Eukaryotes - 1360 (source: NCBI BLink). 
| chr3:21399766-21402899 REVERSE LENGTH=2237
Length=2237

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 228/249 (92%), Gaps = 9/249 (4%)
 Strand=Plus/Plus

Query  1    GGAAAACTGAAAAGAGTTTTATGATGAAGGGAAGAACAA-C--CAACATTGTACAGTCGA  57
            ||||||||||||||||||| ||||||||||||||||||| |  ||||| |||||||||||
Sbjct  202  GGAAAACTGAAAAGAGTTTGATGATGAAGGGAAGAACAACCAACAACAGTGTACAGTCGA  261

Query  58   ATCGGTCTTCCAAGAATGGGAAAAGAGATCAAAAGCCACAGAAGACAACATG-TGCTAAA  116
            |||| ||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  262  ATCGCTCTACGAAGAATGGGAAAAGAGATCAAAAGCCACAGAAGACAA-ATGGTGCTAAA  320

Query  117  AGATCT-CTAGAGCAAGAAAGACTCGAAGCTTTTAAAGAGGAATCTAATGTCTCAGTACT  175
             ||||| | |||||||||||||||| |||||  ||| ||||||||||||||||||||| |
Sbjct  321  CGATCTTC-AGAGCAAGAAAGACTCAAAGCTACTAAGGAGGAATCTAATGTCTCAGTAGT  379

Query  176  AGTAGATGATACAACTACACAATCAAAGCTCTCT-ATGAATGATGATCATGCAGTGAATG  234
            |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  380  AGTAGATGATACAACTACACAATCAAAGCTCTCTGATGA-TGATGATCATGCAGTGAATG  438

Query  235  AGTCTTCAG  243
            | |||||||
Sbjct  439  ACTCTTCAG  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5