BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939013
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59830.1 | Symbols: | Integrin-linked protein kinase family... 2433 0.0
AT2G43850.1 | Symbols: | Integrin-linked protein kinase family... 1179 0.0
> AT3G59830.1 | Symbols: | Integrin-linked protein kinase family
| chr3:22102803-22105380 REVERSE LENGTH=1694
Length=1694
Score = 2433 bits (1317), Expect = 0.0
Identities = 1422/1474 (96%), Gaps = 1/1474 (0%)
Strand=Plus/Plus
Query 3 TTCATTATCTATCATCAATCATGGAGAACGTTGCTGCGCAGTTGAAGCGTGGGATATCGA 62
||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 39 TTCATTATC-ATCATCAATCATGGACAACATTGCCGCGCAGTTGAAGCGTGGGATATCGA 97
Query 63 GACAATTCTCGACAGGATCGATGCGACGAACATTAAGCAGACAATTCACACGCCAAAATT 122
||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||
Sbjct 98 GACAATTCTCGACAGGATCAATGAGACGAACATTAAGCCGACAATTCACGCGCCAAAATT 157
Query 123 CTCTTGATCCACGGCGTAACAACATGAGATTCAGCTTCGGCCGTCAATCTTCGCTTGATC 182
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 158 CTCTCGATCCACGGCGTAACAACATGAGATTCAGCTTCGGTCGTCAATCTTCGCTTGATC 217
Query 183 CGATCAGGCGTAGCCCTGAATCTCTTAGCTGCGAGCCGCATATGTCTGTCCCCGAGAATC 242
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CGATCAGACGTAGTCCTGAGTCTCTTAGCTGCGAGCCGCATATGTCTGTCCCCGAGAATC 277
Query 243 TTGATTCGACAATGCAGCTTCTCTTTATGGCGAGTAAAGGCGATGTTAATGGCGTTGAGG 302
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 278 TTGATTCGACGATGCAGCTTCTCTTTATGGCGAGTAAAGGTGATGTTAATGGCGTTGAGG 337
Query 303 AGCTGCTCAACGAAGGAATCGATGTGAATAGCATTGATCTTGATGGTCGAACTGCTCTTC 362
||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 338 AGCTGCTTAATGAAGGAATAGATGTGAATAGCATTGATCTTGATGGTCGTACTGCTCTTC 397
Query 363 ACATTGCTTCTTGTGAAGGTCATTACGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTA 422
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 398 ACATTGCTTCCTGTGAAGGTCATTATGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTA 457
Query 423 ACATCGATGCTCGTGACCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGA 482
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATATCGATGCTCGTGATCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGA 517
Query 483 ATGTTGAAGTGTATAGTCTCTTGAAAGCTCGAGGAGCTAAAGCTCCGAAAACTAGAAAGA 542
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 518 ATGTTGAAGTTTATAATCTCTTGAAAGCTCGAGGCGCTAAAGCTCCGAAAACTAGAAAGA 577
Query 543 CTCCAATGAAGGTAGGGAATCCGAAAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGC 602
||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 578 CTCCAATGACGGTAGGGAATCCAAAAGAAGTTCCTGAGTATGAGCTTAATCCACTCGAGC 637
Query 603 TGCAAGTCCGAAAAGTTGATGGCATTTCAAAGGGGACTTATCAAGTAGCTAAATGGAATG 662
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 638 TGCAAGTCCGAAAAGTTGATGGCATTTCAAAGGGAACTTATCAAGTTGCTAAATGGAATG 697
Query 663 GCACGCGAGTCTCAGTAAAGATATTCGATAAAGATAGTTATTCCGATCCCGAACGAGTAA 722
||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 698 GCACGCGAGTCTCAGTAAAAATATTCGATAAAGATAGCTATTCAGATCCTGAACGAGTAA 757
Query 723 ATGCTTTCACAAACGAATTGACTTTGCTAGCAAAAGCTCGGCATCCAAATATTGTTCAAT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ATGCTTTCACAAACGAATTGACTTTGCTAGCAAAAGCTCGGCATCCAAATATTGTTCAAT 817
Query 783 TTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTAGAGTGTAATCCTAAAG 842
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 818 TTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTTGAGTGTAATCCAAAAG 877
Query 843 GTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGCCTTTCTCCTTCAAAAGCTCTGAGAT 902
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 878 GTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGTCTTTCTCCTTCAAAAGCTCTGAGAT 937
Query 903 TTGCTCTTGATATTGCTAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCGATCA 962
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 938 TTGCTCTTGATATTGCTAGAGGAATGAACTACCTCCATGAATGTAAACCAGATCCGATCA 997
Query 963 TCCACTGCGAGTTAAAGCCAAAAAATATTTTGCTAGATAGAGGAGGACAATTGAAGATCT 1022
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 998 TCCACTGCGAGTTAATGCCAAAAAATATTTTGCTAGATAGAGGAGGGCAATTGAAGATCT 1057
Query 1023 CTGGATTTGGTTTGATAAAGTTGTCAAAGATTGGAGAAGACAATGCAAAAATAGTGAACC 1082
|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1058 CTGGTTTTGGTTTGATAAAGTTGTCAAAGATTGGAGAAGACAGTGCAAAAGTAGTGAACC 1117
Query 1083 ACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAAGATGAAG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAAGATGAAG 1177
Query 1143 TCTTCGATAAAAGGGTTGATGTGCATTCGTTTGGTGTCATTTTGTATGAGTTGACCGAGG 1202
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1178 TCTTCGATAAAAGGGCTGATGTGCATTCGTTTGGTGTCATTTTGTACGAGTTGACCGAGG 1237
Query 1203 GAGTATCTTTATTCCATCCTAAACCACCTGAAGAGGTTGCAGAATCTATGTGTATAGAAG 1262
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1238 GAGTATCTTTATTCCATCCTAAACCACCTGAAGAGGTTGCAGAATCGATTTGTATAGAAG 1297
Query 1263 GTAAAAGACCAACAATCAGAACAAAATCAAAGAGTTACCCTCCGGAATTGAAAGAGTTGA 1322
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1298 GTAAAAGACCAACAATCAGAACAAAGTCAAAGAGTTACCCTCCGGAATTGAAAGAGTTGA 1357
Query 1323 TTGAGGAATGTTGGCATCCAGAAATCAGTATGAGGCCAATATTCTCTGAGATTATTATTC 1382
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1358 TTGAGGAATGCTGGCATCCAGAAATCAGTGTGAGGCCAATATTCTCTGAGATTATTATTC 1417
Query 1383 GGCTCGACAAGATAGTTGCAAACTGTTCCAAGCAGGGTTGGTGGAAAGACACATTTAAGT 1442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GGCTCGACAAGATAGTTACAAACTGTTCCAAGCAGGGTTGGTGGAAAGACACATTTAAGT 1477
Query 1443 TCCCTTGGAAATGAAATGGAAATATTGAATCAAT 1476
||||||||||||||||||||||||||||||||||
Sbjct 1478 TCCCTTGGAAATGAAATGGAAATATTGAATCAAT 1511
> AT2G43850.1 | Symbols: | Integrin-linked protein kinase family
| chr2:18159182-18162044 REVERSE LENGTH=1835
Length=1835
Score = 1179 bits (638), Expect = 0.0
Identities = 1202/1470 (82%), Gaps = 55/1470 (4%)
Strand=Plus/Plus
Query 20 ATC-ATGGAGAACGTTGCTGCGCAGTTGAAGCGTGGGATATCGAGACAATTCTCGACAGG 78
||| ||||||||| | | |||||| | || || || || || ||||||||||| || ||
Sbjct 57 ATCAATGGAGAACATAACCGCGCAGCTCAAACGAGGTATCTCAAGACAATTCTCAACTGG 116
Query 79 ATCGATGCGACGAACATTAAGCAGACAATTCACACGCCA-AAATTCTCTTGATCCACGGC 137
||||| || |||||||| ||| |||| ||||| || || | |||||||| || ||
Sbjct 117 TTCGATTCGTCGAACATTGAGCCGACAGTTCACGCGTCAGTCA-TCTCTTGACCCTCGTA 175
Query 138 GTAACAACATGAGATTCAGCTTCGGCCGTCAATCTTCGCTTGATCCGATCAGGCGTAGCC 197
| | ||||||||| || || ||||| ||||| ||||| || |||||||||||| | || |
Sbjct 176 GGACCAACATGAGGTTTAGTTTCGGTCGTCAGTCTTCTCTCGATCCGATCAGGAGGAGTC 235
Query 198 CTGAATC-T-C-TTA--GCTG-CGAGCCGCATATGTCTGTCCCCGAGAATCTTGATTCGA 251
|||| || | | | | || |||||| |||||||| || || |||||||| |||||||
Sbjct 236 CTGATTCTTCCAAGAGTGATGACGAGCCACATATGTCGGTACCGGAGAATCTCGATTCGA 295
Query 252 CAATGCAGCTTCTCTTTATGGCGAGTAAAGGCGATGTTA-ATGGCGTTGAGGAGCTGCTC 310
| |||||||||||||||||||| || ||||| ||||| | | || | |||||||| ||
Sbjct 296 CGATGCAGCTTCTCTTTATGGCTAGCAAAGGTGATGTCAGA-GGAATCGAGGAGCTTCTT 354
Query 311 AACGAAGGAATCGATGTGAATAGCATTGATCTTGATGGTCGAACTGCTCTTCACATTGCT 370
|||||||||| ||||| |||||||| ||||||||||| || || || |||||||| ||
Sbjct 355 GACGAAGGAATTGATGTTAATAGCATCGATCTTGATGGCCGGACGGCGCTTCACATCGCC 414
Query 371 TCTTGTGAAGGTCAT-TACGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTAACATCGA 429
||||||| || ||| | | ||| ||||||| |||||||||||||||||||||||| ||
Sbjct 415 GCTTGTGAGGGACATCT-TGGTGTCGTTAAGGCTCTTCTTAGCCGGAGAGCTAACATTGA 473
Query 430 TGCTCGTGACCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGAATGTT-G 488
||||||||| || ||||| ||||||||||||| |||||||||||| ||||||||| || |
Sbjct 474 TGCTCGTGATCGATGGGGAAGTACGGCGGCTGCTGATGCAAAGTACTATGGGAAT-TTAG 532
Query 489 AAGTGTATAGTCTCTTGAAAGCTCGAGGAGCTAAAGCTCCGAAAACTAGAAAGACTCCAA 548
| || || | ||||||||| |||||||||||||||| |||||||||||| |||||||| |
Sbjct 533 ATGTTTACAATCTCTTGAAGGCTCGAGGAGCTAAAGTTCCGAAAACTAGGAAGACTCCGA 592
Query 549 TGAAGGTAG-GGAATCCGA-AAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGCTGCA 606
||| || | |||||| | |||||||||||||||||||||||||||||||||| | ||
Sbjct 593 TGACTGT-GTCGAATCC-ACGAGAAGTTCCTGAGTATGAGCTTAATCCACTTGAGGTTCA 650
Query 607 AGTCCGAAAAGT-TGATGGCATTTCAAAGGGGA-CTTATCAAGTAGCTAAATGGAATGGC 664
|||| | ||| | ||||||||| ||||| |||| | ||||||||||||||||||||||||
Sbjct 651 AGTCAGGAAA-TCTGATGGCATCTCAAA-GGGAGCATATCAAGTAGCTAAATGGAATGGC 708
Query 665 ACGCGAGTCTCAGT-AAAGATA-TTCGATAAAGATAGTTATTCCGATCCC-GAACG-AGT 720
||||| || ||||| ||| ||| || |||||||||||||| || || ||| ||||| | |
Sbjct 709 ACGCGGGTTTCAGTCAAA-ATACTT-GATAAAGATAGTTACTCAGA-CCCGGAACGCA-T 764
Query 721 AAATGC-TTTCACAAACGAATTGACTTTGCTAGCAAAAGCT-CGGCATCCAAATATTGTT 778
||| || ||| | | | |||||||| ||||||| ||||| | |||||||||||| || |
Sbjct 765 AAACGCATTT-AGACATGAATTGACGTTGCTAGAAAAAG-TCCGGCATCCAAATGTTATC 822
Query 779 CAATTTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTAGAGTGTAATCCT 838
|| ||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||
Sbjct 823 CAGTTTGTTGGAGCTGTCACTCAGAATATACCGATGATGATTGTAGTCGAGTATAATCCG 882
Query 839 AAAGGTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGCCTTTCTCCTTCAAAAGCTCTG 898
||||| ||| ||||||| ||||| ||||||||||| || |||||||| || || || ||
Sbjct 883 AAAGGAGATTTAAGTGTATATCTCCAAAAGAAAGGACGTCTTTCTCCATCCAAGGCACTT 942
Query 899 AGATTTGCTCTTGATATTGCTAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCG 958
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 943 AGATTTGCTCTTGATATTGCCAGAGGCATGAACTACCTCCATGAATGTAAACCAGATCCA 1002
Query 959 ATCATCCACTGCGAGT-TAAAGCCAAAAAATATTTTGCTAGATAGAGGAGGACAATTGAA 1017
||||| ||||| || | |||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1003 ATCATTCACTGTGA-TCTAAAGCCAAAAAATATTTTGCTGGATAGAGGAGGGCAATTAAA 1061
Query 1018 GATCTCTGGATTTGGTTTGATAA-AGTTGTC-AAAGATTGGAGAAGACAATGCAAAAATA 1075
|||||| ||||||||| |||||| | ||||| ||| ||| | ||||||| || ||| ||
Sbjct 1062 GATCTCAGGATTTGGTATGATAAGA-TTGTCGAAA-ATTTCACAAGACAAGGCGAAAGTA 1119
Query 1076 GTGAACCACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAA 1135
| |||||| |||| || || ||| || |||||||| || ||||| || |||| |||
Sbjct 1120 GCAAACCACAAAGCACATATAGATCTCTCTAATTACTACATTGCACCAGAGGTTTATAAA 1179
Query 1136 GATGAAGTCTTCGATAAAAGGGTTGATGTGCATTCGTTTGGTGTCATTTTGTATGAGTTG 1195
|| ||| | ||||| ||||||||||| || || |||||||||||||| || ||| |
Sbjct 1180 GACGAAATATTCGACCTAAGGGTTGATGCACACTCCTTTGGTGTCATTTTATACGAGATA 1239
Query 1196 ACCGAGGGAGTATCT-TTATTCCATCCTAAACCACCTGAAGAGGTTGC-AGAATCTATGT 1253
|| ||||||||| | || |||||||| | ||| |||||||| ||||| ||||| ||||
Sbjct 1240 ACAGAGGGAGTACCAGTT-TTCCATCCGAGACCTCCTGAAGAAGTTGCGAGAATG-ATGT 1297
Query 1254 G-TATAGAAGGTAAA-AGACCAACAATCAGAACAAAATCAAAGA-GTTACCCTCCGGA-A 1309
| | ||||||| ||| ||||| | ||| ||| || |||| || |||||||||| || |
Sbjct 1298 GCT-TAGAAGG-AAAGAGACCTGTATTCAAAACTAAGTCAA-GAAGTTACCCTCCAGATA 1354
Query 1310 TTGAAAGAGTTGATTGAGGAATGTTGGCATCCAGAAATCAG-TATGAGGCCAATATTCTC 1368
| ||||||||||| ||| ||||||||||||||||| | | ||| || || | ||||||
Sbjct 1355 TA-AAAGAGTTGATCGAGAAATGTTGGCATCCAGAAG-CGGGTATTAGACCGACATTCTC 1412
Query 1369 TGAGATTATTATTCGGCTCGACAAGATAGTTGCAAACTGTTCCAAGCAGGGTTGGTGGAA 1428
||| ||||||||||| || ||||| ||||| ||||| || || || || || ||||||||
Sbjct 1413 TGAAATTATTATTCGACTTGACAAAATAGTAGCAAATTGCTCTAAACAAGGATGGTGGAA 1472
Query 1429 AGACACATTTAAGTTCCCTTGGAAATGAAA 1458
||||||||| |||||||||||||||| |||
Sbjct 1473 AGACACATTCAAGTTCCCTTGGAAATAAAA 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5