BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939018
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1384 0.0
AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 680 0.0
> AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G43945.1);
Has 292 Blast hits to 292 proteins in 84 species: Archae -
0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:22116109-22118241
REVERSE LENGTH=1308
Length=1308
Score = 1384 bits (749), Expect = 0.0
Identities = 860/913 (94%), Gaps = 9/913 (1%)
Strand=Plus/Plus
Query 4 TCGTACGTGGTCGTTGTGGAGATGAGTTCGGCTCTACCTTTGAAGCTCTTGTTGCCTCTT 63
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 TCGTACGTGGTCGTAGTGGAGATGAGTTCGGCTCTACCTTTGAAGCTTTTGTTGCCTCTT 228
Query 64 ACAACAACATCACTACTACCTTCTCCGTTCCGATCAGATAACCCTAATTTCCATCGCCGT 123
|||||||| ||| | ||||||||||| |||||||| ||||||||||| ||| ||||||||
Sbjct 229 ACAACAACTTCATTGCTACCTTCTCCTTTCCGATCGGATAACCCTAACTTCTATCGCCGT 288
Query 124 CGttcctcttcctctacttcgtcttcttcccaatctcattctccttctctgcttttctct 183
|||||||||||||||||||||| |||||| ||||| || || || || ||||||||||
Sbjct 289 CGTTCCTCTTCCTCTACTTCGTGTTCTTCTCAATCCCA--ATCGTT-TCAGCTTTTCTCT 345
Query 184 GTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGTGCTTTCCTGAACAA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGTGCTTTCCTGAACAA 405
Query 244 ACGGGAGATCGAGAAGACGTGGATAGTTGGATGAACAAAGAGGACAATGTGACTTGTAGG 303
||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 406 ACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGG 465
Query 304 TTTGAATCAGATGAAG--A-CACCACCACCGGACTCCGGATTCCAACACAAGCTCAGGCT 360
||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 466 TTTGACTCAGATGAAGACACCACCACCACCGGACTCCGGATTCCAACACAAGCTCAAGCT 525
Query 361 ATCGTTGAAGGACCTGGTTCAGTTGCTGTGTCGGAGCTACAGCCAGTCCCTGATGTAGAT 420
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 526 ATCGTTGAAGGACCTGGTTCACTTGCTGTGTCGGAGCTACAACGAGTCCCTGATGTAGAT 585
Query 421 TATATACAAGAGCTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGA 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TATATACAAGAACTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGA 645
Query 481 ACAAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCTATGCCATGGTT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 646 ACTAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCTATGCTATGGTT 705
Query 541 ATAACTAAAAACCATATCTACACATCAGGTGCAGCTGGAACCAATGCAGCTGTTATAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATAACTAAAAACCATATCTACACATCAGGTGCAGCTGGAACCAATGCAGCTGTTATAAGA 765
Query 601 GGTGCACTTAGAGCAGAAAGACCGGAGCTTCTTACAGTTATCTTACCTCAAAGTTTGAAA 660
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 766 GGTGCACTTAGAGCAGAGAGACCAGAGCTTCTTACAGTTATCTTACCTCAAAGTTTGAAA 825
Query 661 AAACAACCTCCTGAGAGCCAGGAACTATTGTCAAAAGTACAAAATGTGATAGAAAAGCCT 720
|| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 826 AAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAGTACAAAACGTGATAGAAAAGCCT 885
Query 721 CACAACGACCATTTACCATTATTAGAAGCCAGCAGGCTTTGTAACATGGACATCATATCA 780
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 886 CACAACGACCATTTACCGTTATTAGAAGCCAGCAGGCTATGTAACATGGATATCATATCA 945
Query 781 CAAGTGCAACAAATAATCTGCTTTGCGTTTCATGACAGTAAGCTTCTCATGGAGACATGT 840
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 946 CAAGTGCAACAAATCATTTGCTTTGCGTTTCATGATAGTAAGCTTCTCATGGAGACATGT 1005
Query 841 CAAGAAGCCAAAAATCTCCGGAAGATTGTTACTCTCTTCTACCTCGATTGATTGATTTCA 900
|||||||| | ||||||||||||||||||||| ||||||||||| |||||| ||||| ||
Sbjct 1006 CAAGAAGCTAGAAATCTCCGGAAGATTGTTACCCTCTTCTACCTGGATTGAGTGATT-CA 1064
Query 901 GT-TT-CCCACTT 911
|| || |||||||
Sbjct 1065 GTGTTTCCCACTT 1077
> AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins
in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi
- 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source:
NCBI BLink). | chr2:18197844-18200194 REVERSE LENGTH=1227
Length=1227
Score = 680 bits (368), Expect = 0.0
Identities = 500/564 (89%), Gaps = 8/564 (1%)
Strand=Plus/Plus
Query 334 CTCCGGATTCCAACACAAGCTCAGGCTATCGTTGAAGGACCTGGTTCAGTTGCTGTGTCG 393
||| ||||||| || ||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 519 CTCAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCA 578
Query 394 GAGCTACAGCCAGTC-CCTGATGTAGATTATATACAAGAGCTGTTGGCTATACAGCAACA 452
|||||| | || | | ||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct 579 GAGCTAAAACCCG-CTGCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCA 637
Query 453 AGGACCAAGAACAATTGGCTTCTTTGGAACAAGAAATATGGGTTTCATGCATCAAGAGCT 512
||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 638 AGGTCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACT 697
Query 513 CATTCAGATTCTTAGCTATGCCATGGTTATAACTAAAAACCATATCTACACATCAGGTGC 572
||| |||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 698 GATTGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGC 757
Query 573 AGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTT-AGAGCAGAAAGACCGGAGCTTC 631
| ||||||| ||||| || || || ||||||||| || |||||||| ||||| ||||| |
Sbjct 758 ATCTGGAACTAATGCTGCAGTCATCAGAGGTGCA-TTGAGAGCAGAGAGACCAGAGCTGC 816
Query 632 TTACAGTTA-TCTTACCTCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACTATTG 690
||||||| | || |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 817 TTACAGTAATTC-TACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTG 875
Query 691 TCAAAAGTACAAAATGTGATAGAAAAGCCTCACAACGACCATTTACCATTATTAGAAGCC 750
|| ||||||||||| ||| |||||||||| || || |||||||| ||||| |||||||||
Sbjct 876 TCTAAAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCC 935
Query 751 AGCAGGCTT-TGTAACATGGACATCATATCACAAGTGCAACAAATAATCTGCTTTGCGTT 809
|||||| || ||||| |||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 936 AGCAGG-TTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTT 994
Query 810 TCATGACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCCAAAAATCTCCGGAAGATTGT 869
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 995 TCATGACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGT 1054
Query 870 TACTCTCTTCTACCTCGATTGATT 893
|||||||||||||||||||||||
Sbjct 1055 CACTCTCTTCTACCTCGATTGATT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5