BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939019
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205235-1... 134 3e-30
> AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205235-18208218
REVERSE LENGTH=2125
Length=2125
Score = 134 bits (72), Expect = 3e-30
Identities = 212/273 (78%), Gaps = 35/273 (13%)
Strand=Plus/Plus
Query 22 ATGGCTGATCAACAAACCCTAGATT-CTC--CTACTCCT-C--CTCAATCCGATG----A 71
||||||||||||||||||||||||| ||| || ||||| | |||||||||||| |
Sbjct 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247
Query 72 TC-C-CT----CTC-AC-TCC-C-ACT-CTT---CTTCTTCTTCCCCAGCTCCTA-CCCT 116
|| | || ||| || ||| | ||| ||| ||||||||||| ||| ||| | | ||
Sbjct 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCC-ATCACT 306
Query 117 CTTAAGAACTTTCTCCTCT-AGTCGCCTCAATG-CTAATGCTCCTGAGTTCGTTCCTGGT 174
||| || || |||||| | ||||| ||||| | | | |||||||||||||||||||||
Sbjct 307 CTTGAGGTCTCTCTCCT-TAAGTCGACTCAACGCCGGA-GCTCCTGAGTTCGTTCCTGGT 364
Query 175 CGAACTACTCCGCCGTTGCCTCAGCC---GAGGATGATGATCCCACCTCCGCCTCCTCCT 231
||||||||||| ||| ||||||| || ||||||||| ||||| ||||| || || |
Sbjct 365 CGAACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCA- 423
Query 232 CTGTTT-CTTCATATGTACCACCACCCTCCTCC 263
| || | ||||||||||| ||||||| |||||
Sbjct 424 CGGTATGCTTCATATGTATCACCACCAGCCTCC 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5