BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939031
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59980.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1421 0.0
> AT3G59980.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr3:22154244-22155641 REVERSE LENGTH=1177
Length=1177
Score = 1421 bits (769), Expect = 0.0
Identities = 836/868 (96%), Gaps = 5/868 (1%)
Strand=Plus/Plus
Query 1 TTTTGAGCTACTCGAGGCATTGCCATGGCGGCGACGTTAGCTGTTTTCT-CCGGTGGTCT 59
||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||
Sbjct 48 TTTTGAGCTACTCGAGGCATTTCCATGGCGGCGACGATAGCTGTTTT-TACCGGTGGTCT 106
Query 60 GAAAGTGAAGGCTGGAGTTCTCGCCGTTCAAATCTCATCGCTTCCTCTCCGCCGCGAATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 GAAAGTGAAGGCTGGAGTTCTCGCCGTTCAAATCTCATCGCTTCCTCTCCGCCGCGAATT 166
Query 120 CCCTCGTTACTTGTCGTATTCGTCGAAGAGGACGACAGTACCGGCAATCTCCTCATCTCT 179
||||||||||||||||| ||| || ||||| ||||||| ||||||||||||| |||||
Sbjct 167 CCCTCGTTACTTGTCGTCTTCCTC---GAGGAGGACAGTAGCGGCAATCTCCTCGTCTCT 223
Query 180 TCGAATCTCCGCCGTTTATAACCATCACCAGCGTAATCGAAACTCTTGGCCTCGAGTTGC 239
|||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 224 TCGAGTCTCCGCCGTATATAACCATCAGCAGCGTAATCGAAGCTCTTGGCCTCGAGTTGC 283
Query 240 TACTTTCTGTACGGCGGCTCCCGATGCCGGCACGACGGTTTCAGCGGATGAATCGGAGAA 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 284 TACTTTCTGTACGGCGGCTCCAGATGCCGGCACGACGGTTTCAGCGGATGAATCGGAGAA 343
Query 300 GAAGAGCGAATCTCAGAAGGAGGAGGAGAATGTGAAGGAGACGGCGAATCTGTTAGATGT 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 344 GAAGAGCGAATCTCAGAAGGAAGAGGAGAATGTGAAGGAGACGGCGAATCTGTTAGATAT 403
Query 360 AAAAGTAGGACGAATTGTGAAAGCTTGGCAACACGAGGAAGCTGATTCTCTGTATGTTGA 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 404 AAAAGTAGGACGAATTGTGAAAGCTTGGCAACACGAAGAAGCTGATTCTCTGTATGTTGA 463
Query 420 AGAAGTCGACATCGGTGAAGCTGAGCCCAGAATCATCTGTAGTGGTCTCGTCAAATATGT 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 464 AGAAGTCGACATCGGTGAAGCTGAGCCCAGAATCATCTGCAGTGGTCTCGTCAAATATGT 523
Query 480 TCCTCTCGATCTCCTTCAGGGTGCATCAGTGGTGGTGCTGGCTAATCTGAAGCCGAGGAA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TCCTCTTGATCTCCTTCAGGGTGCATCAGTGGTGGTGCTGGCTAATCTGAAGCCGAGGAA 583
Query 540 TATGAGAGGGGTTAAGTCATGTGGTATGCTTCTAGCTGCATCAGACGCAGCTCATGAAAA 599
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 584 TATGAGAGGGGTTAAGTCATGTGGTATGCTTTTAGCTGCATCTGACGCAGCTCATGAAAA 643
Query 600 TGTTGAGCTTCTTGTTCCACCAGAAGGCTCTGTTCCTGGAGATAGAGTTTGGTTTGGTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGTTGAGCTTCTTGTTCCACCAGAAGGCTCTGTTCCTGGAGATAGAGTTTGGTTTGGTAA 703
Query 660 CGAAGAAGATCTCGAGCAGCTTCCTGAACCTGCACCTCCTAATAAGGTTCAAAAGAAGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CGAAGAAGATCTCGAGCAGCTTCCTGAACCTGCACCTCCTAATAAGGTTCAAAAGAAGAA 763
Query 720 GATATGGGAATCGGTGCAACCGCTTTTGAAGACGGATGAGTCTGGTGTTTCGATGCTTAA 779
||| ||||||| ||||||||| ||||||||||| |||| |||||||||||| ||||||||
Sbjct 764 GATGTGGGAATTGGTGCAACCACTTTTGAAGACAGATGCGTCTGGTGTTTCAATGCTTAA 823
Query 780 GGAGCATTTGATGCGGACATCTTCTGGTCTTGTTACTTCCAAGTCTTTACGAAATGCCAA 839
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 824 GGAGCATTTGATGCGGACATCTTCTGGTCTTGTTACTTCCAAGTCTTTAAGAAATGCCAA 883
Query 840 CATTTCTTGATTTCTTTTAAAAGCTATT 867
||||||||||||||| ||||||||||||
Sbjct 884 CATTTCTTGATTTCTGTTAAAAGCTATT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5