BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939034

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60010.1 | Symbols: ASK13, SK13 | SKP1-like 13 | chr3:221630...   556    5e-158


> AT3G60010.1 | Symbols: ASK13, SK13 | SKP1-like 13 | chr3:22163094-22163558 
REVERSE LENGTH=465
Length=465

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 416/470 (89%), Gaps = 13/470 (3%)
 Strand=Plus/Plus

Query  27   ATGTCGAAGATGGTTATGTTGCAGAGCTCCGATGGTGAATCTTTTCAGGTAGAAGAAGCA  86
            |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct  1    ATGTCGAAGATGGTTATGTTGCTGAGCTCCGATGGTGAATCTTTCCAGGTCGAAGAAGCA  60

Query  87   GTCGCGGTCCAGTCGCAGACGATAGCACACATGGTTGAAGACGATTGCGTCGGTGATGAA  146
            |||||||||||||| |||||||||||||| ||| ||||||||||||||||||   ||| |
Sbjct  61   GTCGCGGTCCAGTCACAGACGATAGCACATATGATTGAAGACGATTGCGTCGCCAATGGA  120

Query  147  ATCCCTATCTCAAACGTCACAGGAGCCACCCTCTCGAAGGTGATCGAGTATTGCAAGAAA  206
             |||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct  121  GTCCCTATCGCAAACGTTACAGGAGTCATCCTCTCGAAGGTGATCGAGTATTGCAAGAAA  180

Query  207  CACGTAGTTGCTGCTGAATCACTAACCGAGGAGTGG---GACGAACTCAAGAAGTGGGAC  263
            ||||| |||  | |||| |||| |||||| ||| |    |||||||||||||||||||||
Sbjct  181  CACGTCGTT--T-CTGATTCACCAACCGAAGAGAGCAAAGACGAACTCAAGAAGTGGGAC  237

Query  264  GCAGAATTCATGAAGGCGATGGAACAGTCG---ACTCTTTTTCATGTTATTTTGGCTGCG  320
            || || |||||||||||  |||||||||||   ||||| ||| |||||||  ||||||||
Sbjct  238  GCTGAGTTCATGAAGGCCCTGGAACAGTCGTCGACTCTCTTTGATGTTATGCTGGCTGCG  297

Query  321  AATTACCTAAACATTAAAGATTTGTTTGATCTTGGTTGCCAAACTGTTGCTGACACGATC  380
            |||||||||||||| |||||  || |||| ||||||||||||||||||||||||| ||||
Sbjct  298  AATTACCTAAACATAAAAGACCTGCTTGACCTTGGTTGCCAAACTGTTGCTGACATGATC  357

Query  381  ACTGATAAGAATAC-AGACGAGATTCGTGCACTTTTTGGCATC-AGGAACGATTTTACAC  438
            ||||  ||||| || ||||||||||||||||||| |||||||| || |||||||||||||
Sbjct  358  ACTGGCAAGAA-ACCAGACGAGATTCGTGCACTTCTTGGCATCGAG-AACGATTTTACAC  415

Query  439  CGGAGGAAGAAGAGGAGATTCGTCAGCAGAATCAATGGGCTTTTGAATGA  488
            ||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct  416  CGGAGGAGGAAGAGGAGATTCGTAAGGAGAATCAATGGGCTTTTGAATGA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5