BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939035
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60020.1 | Symbols: ASK5, SK5 | SKP1-like 5 | chr3:22164844-... 573 5e-163
> AT3G60020.1 | Symbols: ASK5, SK5 | SKP1-like 5 | chr3:22164844-22165305
REVERSE LENGTH=462
Length=462
Score = 573 bits (310), Expect = 5e-163
Identities = 416/467 (89%), Gaps = 7/467 (1%)
Strand=Plus/Plus
Query 23 ATGTCGAAGAAGATGATCGTGTTGAAGAGCTCCGATGGTAAATCGTTCGAGGTCGACGAA 82
||||||| | | | |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGTCGACG-A-A-GATCATGTTGAAGAGCTCCGATGGTAAATCGTTCGAGATCGACGAA 57
Query 83 GCCGTGGCACGCAAATCAGT-GACGATAAATAATATGGCTGAGGACGAATGCGCCGA-TA 140
| |||||||||||||||| | | ||||||| |||||| |||||||| |||||| | |
Sbjct 58 GACGTGGCACGCAAATCAATCG-CGATAAACCATATGGTTGAGGACGGCTGCGCC-ACTG 115
Query 141 ATGGAATCCCGCTTCCAAACGTCACAAGTAAGATCCTCAAGATTGTGATCGCGTATTGCA 200
||| ||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||||
Sbjct 116 ATGTAATACCGCTTCGAAACGTCACAAGCAAGATTCTCAAGATTGTGATCGATTATTGCG 175
Query 201 AGAAGCACGTCGAGAGCAACGAAGAAGAAGATCTCAAGGAGTGGGACGCTGATTTCATGA 260
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGAAGCACGTCAAGAGCAAAGAAGAAGAAGATCTCAAGGAGTGGGACGCTGATTTCATGA 235
Query 261 AGAAGATCGAACCATCCATTCTCTTTGATGTTATGATTGCTGCGAATTATCTCAATATCC 320
||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 236 AGACGATCGAAACAACCATTCTCTTTGATGTTATGATGGCTGCGAATTATCTCAATATTC 295
Query 321 CAAGCCTTCTTGATCTCACATGTCAAACAGTCGCTGCTTTGCTCCAGGCTGATTTGCTCT 380
|||||||||||||||||||||| |||| ||| | | |||||||||||||||||||||||
Sbjct 296 AAAGCCTTCTTGATCTCACATGTAAAACTGTCTCGGATTTGCTCCAGGCTGATTTGCTCT 355
Query 381 CAGGAAAAACTCCAGCTGAGATTCGCACACGCTTCAACATCGAGAACGATTTAACACCAG 440
|||| |||||||||| |||||||||| | | ||||||||||||||||||| ||||| |||
Sbjct 356 CAGGGAAAACTCCAGATGAGATTCGCGCGCACTTCAACATCGAGAACGATCTAACAGCAG 415
Query 441 CGGAAGTAGCTGAGATTCGTAAGGAGAATCAGTGGGCTTTTGAATGA 487
|||||||||| |||||||| |||||||||| ||||||||| |||||
Sbjct 416 AGGAAGTAGCTAAGATTCGTGAGGAGAATCAATGGGCTTTTCAATGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5