BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939040
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2340 0.0
AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 850 0.0
AT3G60040.1 | Symbols: | F-box family protein | chr3:22175937-... 525 4e-148
> AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:22180025-22181776 REVERSE LENGTH=1680
Length=1680
Score = 2340 bits (1267), Expect = 0.0
Identities = 1406/1472 (96%), Gaps = 13/1472 (1%)
Strand=Plus/Plus
Query 1 TAATGGGGATTGAGATCAGATATGAACTTGGCACTTGTTTTTGGCACAAATGTAGTTCGT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 32 TAATGGGGATTGAGATCAGATATGAACTTGGCACTTGTTTTAGGCACAAATGTAGTTCGT 91
Query 61 AAAGCTTATCGCTTTCTCTTCAGCTCCAGAAAATTCTGCAATGGGAACTTTGGTGGTGAT 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 92 AAAGCTTATCGCTTTCTCTTCATCTCCAGAAAATTCTGCAATGGGAACTTTGGTGGTAAT 151
Query 121 GAAATCGATAATGGTTTCCCTGAATTAGATTTGGATTGTGGATTTGACGAGGAATCCAAT 180
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 152 GAAATCGATAATGGTTTCCC-----T-GATTTGGATTGTGGATTTGACGAGGACTCCAAT 205
Query 181 ATCACTGAGCTCAAAAGCATCGATCGAGAAGTGATCTCTGTTCGGAGTAGGTTTTTGGAG 240
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 ATCAGTGAGCTCAGAAGCATCGATCGAGAAGTGATCTCTGTTCGGAGTAGGTTTTTGGAG 265
Query 241 AGTGCCAAGGTTGGTGCGTCTCGTGTTCTCGAGACATTGCAGCTAGATGAATCTGGATTT 300
|||||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 266 AGTGCCAATCATAGTGCGTCTCGTGTTCTCGTGACATTGCAGCTAGATGAATCTGGATTC 325
Query 301 AATACAAAGTCAGTTTTAGATGAATTGAATGTTAGAGTCTCAGGGCTTCTAGTGAGGGAG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AATTCAAAGTCAGTTTTAGATGAATTGAATGTTAGAGTCTCAGGGCTTCTAGTGAGGGAG 385
Query 361 GTTCTTGTAGGGATCTTAAGGAACTTGAGTTATGATAATAAGACCAGATGTGCGAGATTA 420
||||||||||||||||||||||||||||| |||||||||||| | |||||||||| | ||
Sbjct 386 GTTCTTGTAGGGATCTTAAGGAACTTGAGCTATGATAATAAGGCAAGATGTGCGAAACTA 445
Query 421 GCTTATAGATTCTTCGTGTGGTCTGGAGAACAAGATTGTTTCAGGCACACAGTGAATTCT 480
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 446 GCTTATAGATTCTTCCTGTGGTCTGGAGAACAAGAGTGTTTTAGGCACACAGTGAATTCT 505
Query 481 TATCATCTGCTTATGAAGATATTTGCAGAATGTGGAGAGTATAAGGCAATGTGGAGATTA 540
|||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 506 TATCATTTGCTTATGAAGATATTTGCAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTA 565
Query 541 GTTGATGAGATGGTTCAAGACGGATTCCCGACAACAGCGAGGACGTTTAATCTGTTGATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GTTGATGAGATGGTTCAAGACGGATTCCCGACAACAGCGAGGACGTTTAATCTGTTGATT 625
Query 601 TGTAGTCGCGGTGAAGCAGGTTTGGCGAAACAAGCTGTTGTGCAGTTTATGAAGTCCAAG 660
|||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 626 TGTAGTTGTGGTGAAGCAGGTTTAGCGAAACAAGCTGTTGTGCAGTTCATGAAGTCCAAG 685
Query 661 ACTTTCAATTACCGACCTTTCAAACACTCTTATAACGCAATTTTGAATTCTTTGCTAGGT 720
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 686 ACTTTTAATTACCGACCTTTCAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGT 745
Query 721 GTAAGACAGTATAAATTGATCGAGTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCG 780
|||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 746 GTAAAACAGTATAAATTGATTGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCG 805
Query 781 CCTGATGTTCTGACTTATAACATTCTCTTGTGGACAAACTATAGGTTAGGGAAAATGGAT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CCAGATGTTCTGACTTATAACATTCTCTTGTGGACAAACTATAGGTTAGGGAAAATGGAT 865
Query 841 AGATTCGACAGGCTGTTTGATGAGATGGCTCGAGATGGGTTGTCTCCGGATTTCT-ACAC 899
||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 866 AGATTCGACAGGCTGTTTGATGAGATGGCTCGAGATGGGTTCTCTCCGGATT-CTTACAC 924
Query 900 ATACAACATTTTGCTGCACATTTTGGGGAAAGGAAATAAACCGCTCGCTGCTCTTACTAC 959
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 925 ATACAACATTTTGCTGCACATTTTGGGGAAAGGGAATAAACCTCTCGCTGCTCTTACTAC 984
Query 960 GTTGAACCATATGAAGGAAGTAGGAATCGACCTGAGTGTCCTCCATTACACTACTTTGAT 1019
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 985 GTTGAACCATATGAAGGAAGTAGGAATCGACCCGAGTGTCCTCCACTACACTACTTTGAT 1044
Query 1020 AGACGGTCTGAGCCGTGCAGGGAATTTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGT 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1045 AGACGGTCTGAGCCGTGCAGGGAATCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGT 1104
Query 1080 GAAAGCTGGGTGCAGACCGGATGTTGTTTGTTACACCGTCATGATAACAGGGTATGTTGT 1139
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1105 GAAAGCTGGGTGCAGACCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGTTGT 1164
Query 1140 ATCTGGAGAGCTCGAGAAGGCAAAGGAGATGTTTAGAGAGATGACGGTAGAA-GGGCAAT 1198
||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1165 ATCTGGAGAGCTCGACAAGGCAAAGGAGATGTTTAGAGAGATGACAGT-GAAAGGGCAAT 1223
Query 1199 TACCGAATGTATTCACATACAACTCGATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCA 1258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1224 TACCGAATGTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCA 1283
Query 1259 GAGAGGCGTGTTGGTTGCTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAG 1318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GAGAGGCGTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAG 1343
Query 1319 TGTATAGTACACTGGTTAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAGGCTCGCAAGG 1378
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1344 TGTATAGTACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGG 1403
Query 1379 TAATAAGAGAGATGGTGAAGAAAGGACACTATGTTCATTTAGTTCCAAAGATGTTGAAAT 1438
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1404 TAATAAGAGAGATGGTGAAGAAAGGACATTATGTTCATTTAGTTCCAAAGATGATGAAAT 1463
Query 1439 ATAGGAGATGATAGAGTTTTGTTTTGTTAATT 1470
||||||||| | || ||||||||||||||||
Sbjct 1464 ATAGGAGAT-A--GACTTTTGTTTTGTTAATT 1492
> AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:20791675-20793564 REVERSE LENGTH=1890
Length=1890
Score = 850 bits (460), Expect = 0.0
Identities = 1009/1267 (80%), Gaps = 66/1267 (5%)
Strand=Plus/Plus
Query 214 ATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAAGGTTGGTGCGTCTCGTGTTCTCGAG 273
||||||||| | | |||||| |||||||| | || | |||||||||| ||||||||
Sbjct 510 ATCTCTGTTAGAAAAAGGTTTATGGAGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGAT 569
Query 274 ACATTGCAGCTAGA-TGAAT-CTGGATTT-AATAC-AAAGTCAGTTTTAGATGAATTGAA 329
|| || |||| ||| || | | || ||| ||||| ||| |||| |||||||||||||||
Sbjct 570 ACGTTACAGCAAGATTG--TCCCGG-TTTCAATACGAAA-TCAGCTTTAGATGAATTGAA 625
Query 330 TGTTAGAGTCTCAGGGCT-TCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGAACT-TG 387
|||| | |||||||||| | ||||||| ||||||||||| |||||||||| ||||| ||
Sbjct 626 TGTTTCAATCTCAGGGCTAT-TAGTGAGAGAGGTTCTTGTTGGGATCTTAA-GAACTCTG 683
Query 388 AG-TTATGATAATAAGACCAGATGTGC-GAGATTAGCTTA-TAGATTCTTCGTGTGGTCT 444
|| || ||||||||| || || ||||| || | ||||| || ||||| ||||||| |
Sbjct 684 AGCTT-TGATAATAAAACAAGGTGTGCTAAG-CTCGCTTACAAG-TTCTTTGTGTGGTGT 740
Query 445 GGAGAACAAGATTGTTTCAGGCACACAGTGAATTCTTATCATCTGCTTATGAAGATATTT 504
|| | |||||| |||||||||||| | ||||| ||||||| | |||||||||||||||
Sbjct 741 GGTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTT 800
Query 505 GCAGAATGTGGAGAGTATAAGGCAATGTGGAGATTAGTTGATGAGATGGTTC-AAGACGG 563
|| |||||||| |||||||| || ||||| || || |||||||||| | || |||||||
Sbjct 801 GCTGAATGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGATGAGAT-GATCAAAGACGG 859
Query 564 ATT-CCCGACAACAGCGA-GGACGTTTAATCTGTTGATTTGTAGTCGCGGTGAAGCAGG- 620
|| || |||||||| | | ||||||||||| ||||| |||| | |||| ||||||||
Sbjct 860 -TTATCCAACAACAGC-ATGCACGTTTAATCTATTGATATGTACTTGCGGGGAAGCAGGC 917
Query 621 TTTGGCGAAACAAGCTGTTGTGCAGTTTATGAAGTCCAAGACTTTCAATTACCGACCTT- 679
|| || | | | | ||||| |||||| || ||||| || |||||||||||||||||||
Sbjct 918 CTT-GCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGAAAACTTTCAATTACCGACCTTA 976
Query 680 TCAAACACTCTTATAACGCAATTTTGAATTCTTTGCTAGGTGT-AAGACAGTATAAATTG 738
| ||||||||||| || || |||||| ||||||||||||| || || |||||| || ||
Sbjct 977 T-AAACACTCTTACAATGCCATTTTGCATTCTTTGCTAGGGGTGAA-ACAGTACAAGCTG 1034
Query 739 ATCGAGTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCGCCTGATGTTCTGACTTAT 798
|| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1035 ATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTACGCCAGATGTTCTGACTTAC 1094
Query 799 AACATTCTCTTGTG-GACAAACTATAGGTTAGGGAAAATGGATAGA-TTCGACAGGCTGT 856
|||||| | ||| | |||||| |||||||||||||| ||| | || | || ||
Sbjct 1095 AACATTGTAATGTTTG-CAAACTTTAGGTTAGGGAAAACAGATCGGCTTT-ATAGATTGC 1152
Query 857 TTGATGAGATGGCTCGAGATGGGTTGTCTCCGGATTTCTACACATACAACATTTTGCTGC 916
| ||||| |||| | ||| ||||| ||||| ||||| || ||||||||||| | || |
Sbjct 1153 TAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATACATACAACATCCTCCTCC 1212
Query 917 A-CATTTTGGGGAA-AGGAAATAAACCGCTCGCTGCTCTTA-C-TACGTTGAACCATATG 972
| ||| | | || |||||| || || ||||||||||||| | | | | ||| ||||||
Sbjct 1213 ATCATCTAGC--AACAGGAAACAAGCCTCTCGCTGCTCTTAACCTTC-T-GAATCATATG 1268
Query 973 AAGGAAGTAGGAATCGA-CCTGAGTGTCCTCCATTACACTACTTTGATAGACGGTCTGAG 1031
| |||||||||| | || || | ||||| |||||| ||||||| |||||||||| |||||
Sbjct 1269 AGGGAAGTAGGAGTTGAGCCCG-GTGTCATCCATTTCACTACTCTGATAGACGGGCTGAG 1327
Query 1032 CCGTGCAGGGAATTTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGTG 1091
||| || ||||| || || || ||||| |||||| | || |||| |||||||| ||| ||
Sbjct 1328 CCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACGGTGAAAGTTGGATG 1387
Query 1092 CA-GACCGGATGTTGTTTGTTACACCGTCATGATAACAGGGTATGT-TGTATCTGGAGAG 1149
|| | || ||||||||||| ||||| || ||||| ||||| ||| | | | ||| |||
Sbjct 1388 CACG-CCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATATC-AGGTGGGGAG 1445
Query 1150 CTCGAGAAGGCA-AAGGAGATGTTTAGAGAGATGACGGTAGAAGGG-CAATTACCGAATG 1207
|||||||| || ||| | ||||| | ||| ||||| | | ||||| ||| | |||||||
Sbjct 1446 CTCGAGAAAGCCGAAGAA-ATGTTCAAAGAAATGACAGAA-AAGGGGCAACTCCCGAATG 1503
Query 1208 TATTCACATACAACTCGATGATTCGCGGGTTGTGTATGGCGGG-AGAGTTCAGAGAGGCG 1266
| ||||||||||| |||||||| |||||||| ||||||||||| | | |||| |||||||
Sbjct 1504 TTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGGGAAA-TTCAAAGAGGCG 1562
Query 1267 TGTTG-GTTGCTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAG 1325
|| | |||||| ||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct 1563 TGC-GCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTAGTGTATAG 1621
Query 1326 TACACTGGTTAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAGGCTC--GCAAGGTAAT- 1382
||||||||| | | || ||| ||| || |||||| ||| |||||||| | ||| || |
Sbjct 1622 TACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATG-AAG-TAGTG 1679
Query 1383 AAGAGAGATGGT-GAAGAAAGGACACTATGTTCAT-TTAGTTCCAAAGATGTTGAAATAT 1440
||| || ||||| || |||||| || ||||||||| ||| ||| |||| || ||||||
Sbjct 1680 AAG-GACATGGTAGA-GAAAGGGCATTATGTTCATCTTATTTC-AAAGTTGAAAAAATAT 1736
Query 1441 AGGAGAT 1447
|| ||||
Sbjct 1737 AGAAGAT 1743
> AT3G60040.1 | Symbols: | F-box family protein | chr3:22175937-22179728
REVERSE LENGTH=2517
Length=2517
Score = 525 bits (284), Expect = 4e-148
Identities = 316/331 (95%), Gaps = 4/331 (1%)
Strand=Plus/Plus
Query 1121 TGATA-ACAGGGTATGTTGTATCTGGAGAGCTCGAGAAGGCAAAGGAGATGTTTAGAGAG 1179
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2189 TGATAGAC-GGGTATGTTGTATCTGGAGAGCTCGACAAGGCAAAGGAGATGTTTAGAGAG 2247
Query 1180 ATGACGGTAG-AAGGGCAATTACCGAATGTATTCACATACAACTCGATGATTCGCGGGTT 1238
||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2248 ATGACAGT-GAAAGGGCAATTACCGAATGTATTCACATACAACTCAATGATTCGCGGGTT 2306
Query 1239 GTGTATGGCGGGAGAGTTCAGAGAGGCGTGTTGGTTGCTAAAGGAAATGGAATCTAGAGG 1298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2307 GTGTATGGCGGGAGAGTTCAGAGAGGCGTGTTGGTTGTTAAAGGAAATGGAATCTAGAGG 2366
Query 1299 GTGTAACCCGAATTTCGTAGTGTATAGTACACTGGTTAGCTATTTAAGAAAGGCAGGGAA 1358
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2367 GTGTAACCCGAATTTCGTAGTGTATAGTACATTGGTGGGCTATTTAAGAAAGGCAGGGAA 2426
Query 1359 GCTTTCAGAGGCTCGCAAGGTAATAAGAGAGATGGTGAAGAAAGGACACTATGTTCATTT 1418
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2427 GCTTTCAGAGGCTCGCAAGGTAATAAAAGAGATGGTGAAGAAAGGACATTATGTTCATTT 2486
Query 1419 AGTTCCAAAGATGTTGAAATATAGGAGATGA 1449
|||| |||||||| |||||||||||||||||
Sbjct 2487 AGTTTCAAAGATGATGAAATATAGGAGATGA 2517
Score = 206 bits (111), Expect = 7e-52
Identities = 117/120 (98%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 906 CATTTTGCTGCACATTTTGGGGAAAGGAAATAAACCGCTCGCTGCTCTTACTACGTTGAA 965
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2079 CATTTTGCTGCACATTTTGGGGAAAGGGAATAAACCGCTCGCTGCTCTTACTACGTTGAA 2138
Query 966 CCATATGAAGGAAGTAGGAATCGACCTGAGTGTCCTCCATTACACTACTTTGATAGACGG 1025
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2139 CCATATGAAGGAAGTAGGAATCGACCCGAGTGTCCTCCACTACACTACTTTGATAGACGG 2198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5